RNA–Protein interactions for RNA: ENSMUST00000113707.8

Tpm1-216, Transcript of Tropomyosin alpha-1 chain, mousemouse

TSL 1 (best) BASIC

Gene Tpm1, Length 1,898 nt, Biotype protein coding, Subcellular localisation Axon .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1-216ENSMUST00000113707 NischQ80TM9 1593 aa53.03■■■■■ 6.08
Tpm1-216ENSMUST00000113707 Gm35339A0A140LHH9 1649 aa52.85■■■■■ 6.05
Tpm1-216ENSMUST00000113707 Abcc9P70170 1546 aa51.51■■■■■ 5.84
Tpm1-216ENSMUST00000113707 Abcc8B2RUS7 1588 aa50.7■■■■■ 5.71
Tpm1-216ENSMUST00000113707 Rhox8Q6VSS7 320 aa47.78■■■■■ 5.24
Tpm1-216ENSMUST00000113707 ScribQ80U72 1612 aa47.74■■■■■ 5.23
Tpm1-216ENSMUST00000113707 Dcaf1Q80TR8 1506 aa47.26■■■■■ 5.16
Tpm1-216ENSMUST00000113707 Kdm5dQ62240 1548 aa46.64■■■■■ 5.06
Tpm1-216ENSMUST00000113707 Rtl1Q7M732 1744 aa46.55■■■■■ 5.04
Tpm1-216ENSMUST00000113707 NacadQ5SWP3 1504 aa46.51■■■■■ 5.04
Tpm1-216ENSMUST00000113707 Rb1cc1Q9ESK9 1588 aa46.38■■■■■ 5.02
Tpm1-216ENSMUST00000113707 Ccdc180J3QNE4 1664 aa46.09■■■■■ 4.97
Tpm1-216ENSMUST00000113707 Baz1aO88379 1555 aa45.87■■■■■ 4.93
Tpm1-216ENSMUST00000113707 Sycp2Q9CUU3 1500 aa45.5■■■■■ 4.88
Tpm1-216ENSMUST00000113707 Crybg2B7ZCC2 1516 aa45.38■■■■■ 4.86
Tpm1-216ENSMUST00000113707 Zcchc6Q5BLK4 1491 aaKnown RBP45.03■■■■■ 4.8
Tpm1-216ENSMUST00000113707 Smarca2Q6DIC0 1577 aa44.73■■■■■ 4.75
Tpm1-216ENSMUST00000113707 BicraF8VPZ9 1578 aa44.55■■■■■ 4.72
Tpm1-216ENSMUST00000113707 Ccdc136Q3TVA9 1136 aa44.38■■■■■ 4.7
Tpm1-216ENSMUST00000113707 Trim41Q5NCC3 630 aa43.81■■■■■ 4.6
Tpm1-216ENSMUST00000113707 Cecr2E9Q2Z1 1453 aa43.8■■■■■ 4.6
Tpm1-216ENSMUST00000113707 Brd4Q9ESU6 1400 aaKnown RBP43.6■■■■■ 4.57
Tpm1-216ENSMUST00000113707 HrcG5E8J6 738 aa43.35■■■■■ 4.53
Tpm1-216ENSMUST00000113707 Smarca4Q3TKT4 1613 aaKnown RBP43.32■■■■■ 4.53
Tpm1-216ENSMUST00000113707 Synj1Q8CHC4 1574 aa43.27■■■■■ 4.52
Tpm1-216ENSMUST00000113707 CftrP26361 1476 aa43.15■■■■■ 4.5
Tpm1-216ENSMUST00000113707 Cttnbp2B9EJA2 1648 aa43.06■■■■■ 4.48
Tpm1-216ENSMUST00000113707 Pds5bQ4VA53 1446 aaKnown RBP42.91■■■■■ 4.46
Tpm1-216ENSMUST00000113707 Atad2bE9Q166 1460 aaKnown RBP42.9■■■■■ 4.46
Tpm1-216ENSMUST00000113707 Iqgap2Q3UQ44 1575 aa42.81■■■■■ 4.44
Tpm1-216ENSMUST00000113707 Golga3P55937 1487 aa42.77■■■■■ 4.44
Tpm1-216ENSMUST00000113707 Cngb1E1AZ71 1325 aa42.61■■■■■ 4.41
Tpm1-216ENSMUST00000113707 Esf1Q3V1V3 845 aaKnown RBP42.57■■■■■ 4.41
Tpm1-216ENSMUST00000113707 Top2bQ64511 1612 aa42.46■■■■■ 4.39
Tpm1-216ENSMUST00000113707 Cep164Q5DU05 1446 aa42.42■■■■■ 4.38
Tpm1-216ENSMUST00000113707 Rsf1E9PWW9 1441 aaKnown RBP42.24■■■■■ 4.35
Tpm1-216ENSMUST00000113707 Wdr62Q3U3T8 1523 aa42.13■■■■■ 4.33
Tpm1-216ENSMUST00000113707 Ccdc88bQ4QRL3 1481 aa42.12■■■■■ 4.33
Tpm1-216ENSMUST00000113707 Frmpd1A2AKB4 1549 aa42.08■■■■■ 4.33
Tpm1-216ENSMUST00000113707 Ercc6F8VPZ5 1481 aa42.08■■■■■ 4.33
Tpm1-216ENSMUST00000113707 Chic1Q8CBW7 227 aa42.08■■■■■ 4.33
Tpm1-216ENSMUST00000113707 Cc2d2aQ8CFW7 1633 aa41.97■■■■■ 4.31
Tpm1-216ENSMUST00000113707 Fmn1Q05860 1466 aa41.89■■■■■ 4.3
Tpm1-216ENSMUST00000113707 Thoc2B1AZI6 1594 aaKnown RBP41.8■■■■■ 4.28
Tpm1-216ENSMUST00000113707 Unc13aQ4KUS2 1712 aa41.61■■■■■ 4.25
Tpm1-216ENSMUST00000113707 TnnQ80Z71 1560 aa41.56■■■■■ 4.24
Tpm1-216ENSMUST00000113707 Top2aQ01320 1528 aaKnown RBP41.47■■■■■ 4.23
Tpm1-216ENSMUST00000113707 Lamc3Q9R0B6 1581 aa41.45■■■■■ 4.23
Tpm1-216ENSMUST00000113707 Gab3Q8BSM5 595 aa41.43■■■■■ 4.22
Tpm1-216ENSMUST00000113707 Phldb1Q6PDH0 1371 aaKnown RBP41.4■■■■■ 4.22
Tpm1-216ENSMUST00000113707 Fam135aQ6NS59 1506 aa41.26■■■■■ 4.2
Tpm1-216ENSMUST00000113707 Kif15Q6P9L6 1387 aa41.24■■■■■ 4.19
Tpm1-216ENSMUST00000113707 Rapgef2Q8CHG7 1496 aa41.05■■■■■ 4.16
Tpm1-216ENSMUST00000113707 Ubl4bQ9CQ84 188 aa40.97■■■■■ 4.15
Tpm1-216ENSMUST00000113707 Camsap1A2AHC3 1581 aa40.93■■■■■ 4.14
Tpm1-216ENSMUST00000113707 Ccdc18Q640L5 1455 aa40.83■■■■■ 4.13
Tpm1-216ENSMUST00000113707 Ehmt2Q9Z148 1263 aaKnown RBP40.77■■■■■ 4.12
Tpm1-216ENSMUST00000113707 Cux2P70298 1426 aa40.77■■■■■ 4.12
Tpm1-216ENSMUST00000113707 Baz1bQ9Z277 1479 aa40.76■■■■■ 4.12
Tpm1-216ENSMUST00000113707 Il27Q8K3I6 234 aa40.7■■■■■ 4.11
Tpm1-216ENSMUST00000113707 Cep162Q6ZQ06 1403 aa40.7■■■■■ 4.11
Tpm1-216ENSMUST00000113707 NrkQ9R0G8 1455 aa40.61■■■■■ 4.09
Tpm1-216ENSMUST00000113707 Npm2Q80W85 207 aa40.59■■■■■ 4.09
Tpm1-216ENSMUST00000113707 Eif4g1Q6NZJ6 1600 aaKnown RBP40.56■■■■■ 4.08
Tpm1-216ENSMUST00000113707 Grin2bQ01097 1482 aa40.56■■■■■ 4.08
Tpm1-216ENSMUST00000113707 Shroom4Q1W617 1475 aa40.52■■■■■ 4.08
Tpm1-216ENSMUST00000113707 Npm1Q61937 292 aaKnown RBP40.51■■■■■ 4.08
Tpm1-216ENSMUST00000113707 Dnajc5bQ9CQ94 199 aa40.5■■■■■ 4.07
Tpm1-216ENSMUST00000113707 PtprkP35822 1457 aa40.5■■■■■ 4.07
Tpm1-216ENSMUST00000113707 Rpgrip1Q9EPQ2 1331 aa40.41■■■■■ 4.06
Tpm1-216ENSMUST00000113707 Acin1Q9JIX8 1338 aaKnown RBP40.38■■■■■ 4.05
Tpm1-216ENSMUST00000113707 LrpprcQ6PB66 1392 aaKnown RBP40.33■■■■■ 4.05
Tpm1-216ENSMUST00000113707 Mrc2Q64449 1479 aa40.32■■■■■ 4.04
Tpm1-216ENSMUST00000113707 Arhgap35Q91YM2 1499 aa40.32■■■■■ 4.04
Tpm1-216ENSMUST00000113707 Myt1lP97500 1187 aa40.27■■■■■ 4.04
Tpm1-216ENSMUST00000113707 PogzQ8BZH4 1409 aaKnown RBP40.23■■■■■ 4.03
Tpm1-216ENSMUST00000113707 Efcab5A0JP43 1406 aa40.2■■■■■ 4.03
Tpm1-216ENSMUST00000113707 Map3k1P53349 1493 aa40.19■■■■■ 4.02
Tpm1-216ENSMUST00000113707 Duox2A2AQ99 1517 aa40.11■■■■■ 4.01
Tpm1-216ENSMUST00000113707 Mroh2bQ7M6Y6 1581 aa40.06■■■■■ 4
Tpm1-216ENSMUST00000113707 Dhx29Q6PGC1 1365 aaKnown RBP40.06■■■■■ 4
Tpm1-216ENSMUST00000113707 Kif21aQ9QXL2 1672 aa40.02■■■■■ 4
Tpm1-216ENSMUST00000113707 Zeb1Q64318 1117 aa39.92■■■■□ 3.98
Tpm1-216ENSMUST00000113707 AqrQ8CFQ3 1481 aaKnown RBP39.91■■■■□ 3.98
Tpm1-216ENSMUST00000113707 Clip1Q922J3 1391 aa39.9■■■■□ 3.98
Tpm1-216ENSMUST00000113707 Crocc2F6XLV1 1638 aa39.89■■■■□ 3.98
Tpm1-216ENSMUST00000113707 Samd9lQ69Z37 1561 aa39.81■■■■□ 3.96
Tpm1-216ENSMUST00000113707 Eea1Q8BL66 1411 aa39.74■■■■□ 3.95
Tpm1-216ENSMUST00000113707 SynmQ70IV5 1561 aa39.72■■■■□ 3.95
Tpm1-216ENSMUST00000113707 Carmil1Q6EDY6 1374 aa39.69■■■■□ 3.94
Tpm1-216ENSMUST00000113707 Setd5Q5XJV7 1441 aa39.6■■■■□ 3.93
Tpm1-216ENSMUST00000113707 Arap1Q4LDD4 1452 aa39.56■■■■□ 3.92
Tpm1-216ENSMUST00000113707 Erich3F6QRE9 1637 aa39.55■■■■□ 3.92
Tpm1-216ENSMUST00000113707 Ankrd26Q811D2 1581 aa39.54■■■■□ 3.92
Tpm1-216ENSMUST00000113707 Plb1Q3TTY0 1478 aa39.54■■■■□ 3.92
Tpm1-216ENSMUST00000113707 Rad54l2Q99NG0 1466 aa39.54■■■■□ 3.92
Tpm1-216ENSMUST00000113707 Urb2E9Q7L1 1524 aaKnown RBP39.48■■■■□ 3.91
Tpm1-216ENSMUST00000113707 Arhgef5E9Q7D5 1581 aa39.47■■■■□ 3.91
Tpm1-216ENSMUST00000113707 Polr1aO35134 1717 aaKnown RBP39.41■■■■□ 3.9
Tpm1-216ENSMUST00000113707 Cux1P53564 1515 aa39.39■■■■□ 3.9
Retrieved 100 of 22,080 RNA–protein pairs in 12.9 ms