RNA–Protein interactions for RNA: ENSMUST00000113707.8

Tpm1-216, Transcript of Tropomyosin alpha-1 chain, mousemouse

TSL 1 (best) BASIC

Gene Tpm1, Length 1,898 nt, Biotype protein coding, Subcellular localisation Axon .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1-216ENSMUST00000113707 NischQ80TM9 1593 aa53,03■■■■■ 6,08
Tpm1-216ENSMUST00000113707 Gm35339A0A140LHH9 1649 aa52,85■■■■■ 6,05
Tpm1-216ENSMUST00000113707 Abcc9P70170 1546 aa51,51■■■■■ 5,84
Tpm1-216ENSMUST00000113707 Abcc8B2RUS7 1588 aa50,7■■■■■ 5,71
Tpm1-216ENSMUST00000113707 Rhox8Q6VSS7 320 aa47,78■■■■■ 5,24
Tpm1-216ENSMUST00000113707 ScribQ80U72 1612 aa47,74■■■■■ 5,23
Tpm1-216ENSMUST00000113707 Dcaf1Q80TR8 1506 aa47,26■■■■■ 5,16
Tpm1-216ENSMUST00000113707 Kdm5dQ62240 1548 aa46,64■■■■■ 5,06
Tpm1-216ENSMUST00000113707 Rtl1Q7M732 1744 aa46,55■■■■■ 5,04
Tpm1-216ENSMUST00000113707 NacadQ5SWP3 1504 aa46,51■■■■■ 5,04
Tpm1-216ENSMUST00000113707 Rb1cc1Q9ESK9 1588 aa46,38■■■■■ 5,02
Tpm1-216ENSMUST00000113707 Ccdc180J3QNE4 1664 aa46,09■■■■■ 4,97
Tpm1-216ENSMUST00000113707 Baz1aO88379 1555 aa45,87■■■■■ 4,93
Tpm1-216ENSMUST00000113707 Sycp2Q9CUU3 1500 aa45,5■■■■■ 4,88
Tpm1-216ENSMUST00000113707 Crybg2B7ZCC2 1516 aa45,38■■■■■ 4,86
Tpm1-216ENSMUST00000113707 Zcchc6Q5BLK4 1491 aaKnown RBP45,03■■■■■ 4,8
Tpm1-216ENSMUST00000113707 Smarca2Q6DIC0 1577 aa44,73■■■■■ 4,75
Tpm1-216ENSMUST00000113707 BicraF8VPZ9 1578 aa44,55■■■■■ 4,72
Tpm1-216ENSMUST00000113707 Ccdc136Q3TVA9 1136 aa44,38■■■■■ 4,7
Tpm1-216ENSMUST00000113707 Trim41Q5NCC3 630 aa43,81■■■■■ 4,6
Tpm1-216ENSMUST00000113707 Cecr2E9Q2Z1 1453 aa43,8■■■■■ 4,6
Tpm1-216ENSMUST00000113707 Brd4Q9ESU6 1400 aaKnown RBP43,6■■■■■ 4,57
Tpm1-216ENSMUST00000113707 HrcG5E8J6 738 aa43,35■■■■■ 4,53
Tpm1-216ENSMUST00000113707 Smarca4Q3TKT4 1613 aaKnown RBP43,32■■■■■ 4,53
Tpm1-216ENSMUST00000113707 Synj1Q8CHC4 1574 aa43,27■■■■■ 4,52
Tpm1-216ENSMUST00000113707 CftrP26361 1476 aa43,15■■■■■ 4,5
Tpm1-216ENSMUST00000113707 Cttnbp2B9EJA2 1648 aa43,06■■■■■ 4,48
Tpm1-216ENSMUST00000113707 Pds5bQ4VA53 1446 aaKnown RBP42,91■■■■■ 4,46
Tpm1-216ENSMUST00000113707 Atad2bE9Q166 1460 aaKnown RBP42,9■■■■■ 4,46
Tpm1-216ENSMUST00000113707 Iqgap2Q3UQ44 1575 aa42,81■■■■■ 4,44
Tpm1-216ENSMUST00000113707 Golga3P55937 1487 aa42,77■■■■■ 4,44
Tpm1-216ENSMUST00000113707 Cngb1E1AZ71 1325 aa42,61■■■■■ 4,41
Tpm1-216ENSMUST00000113707 Esf1Q3V1V3 845 aaKnown RBP42,57■■■■■ 4,41
Tpm1-216ENSMUST00000113707 Top2bQ64511 1612 aa42,46■■■■■ 4,39
Tpm1-216ENSMUST00000113707 Cep164Q5DU05 1446 aa42,42■■■■■ 4,38
Tpm1-216ENSMUST00000113707 Rsf1E9PWW9 1441 aaKnown RBP42,24■■■■■ 4,35
Tpm1-216ENSMUST00000113707 Wdr62Q3U3T8 1523 aa42,13■■■■■ 4,33
Tpm1-216ENSMUST00000113707 Ccdc88bQ4QRL3 1481 aa42,12■■■■■ 4,33
Tpm1-216ENSMUST00000113707 Frmpd1A2AKB4 1549 aa42,08■■■■■ 4,33
Tpm1-216ENSMUST00000113707 Ercc6F8VPZ5 1481 aa42,08■■■■■ 4,33
Tpm1-216ENSMUST00000113707 Chic1Q8CBW7 227 aa42,08■■■■■ 4,33
Tpm1-216ENSMUST00000113707 Cc2d2aQ8CFW7 1633 aa41,97■■■■■ 4,31
Tpm1-216ENSMUST00000113707 Fmn1Q05860 1466 aa41,89■■■■■ 4,3
Tpm1-216ENSMUST00000113707 Thoc2B1AZI6 1594 aaKnown RBP41,8■■■■■ 4,28
Tpm1-216ENSMUST00000113707 Unc13aQ4KUS2 1712 aa41,61■■■■■ 4,25
Tpm1-216ENSMUST00000113707 TnnQ80Z71 1560 aa41,56■■■■■ 4,24
Tpm1-216ENSMUST00000113707 Top2aQ01320 1528 aaKnown RBP41,47■■■■■ 4,23
Tpm1-216ENSMUST00000113707 Lamc3Q9R0B6 1581 aa41,45■■■■■ 4,23
Tpm1-216ENSMUST00000113707 Gab3Q8BSM5 595 aa41,43■■■■■ 4,22
Tpm1-216ENSMUST00000113707 Phldb1Q6PDH0 1371 aaKnown RBP41,4■■■■■ 4,22
Tpm1-216ENSMUST00000113707 Fam135aQ6NS59 1506 aa41,26■■■■■ 4,2
Tpm1-216ENSMUST00000113707 Kif15Q6P9L6 1387 aa41,24■■■■■ 4,19
Tpm1-216ENSMUST00000113707 Rapgef2Q8CHG7 1496 aa41,05■■■■■ 4,16
Tpm1-216ENSMUST00000113707 Ubl4bQ9CQ84 188 aa40,97■■■■■ 4,15
Tpm1-216ENSMUST00000113707 Camsap1A2AHC3 1581 aa40,93■■■■■ 4,14
Tpm1-216ENSMUST00000113707 Ccdc18Q640L5 1455 aa40,83■■■■■ 4,13
Tpm1-216ENSMUST00000113707 Ehmt2Q9Z148 1263 aaKnown RBP40,77■■■■■ 4,12
Tpm1-216ENSMUST00000113707 Cux2P70298 1426 aa40,77■■■■■ 4,12
Tpm1-216ENSMUST00000113707 Baz1bQ9Z277 1479 aa40,76■■■■■ 4,12
Tpm1-216ENSMUST00000113707 Il27Q8K3I6 234 aa40,7■■■■■ 4,11
Tpm1-216ENSMUST00000113707 Cep162Q6ZQ06 1403 aa40,7■■■■■ 4,11
Tpm1-216ENSMUST00000113707 NrkQ9R0G8 1455 aa40,61■■■■■ 4,09
Tpm1-216ENSMUST00000113707 Npm2Q80W85 207 aa40,59■■■■■ 4,09
Tpm1-216ENSMUST00000113707 Eif4g1Q6NZJ6 1600 aaKnown RBP40,56■■■■■ 4,08
Tpm1-216ENSMUST00000113707 Grin2bQ01097 1482 aa40,56■■■■■ 4,08
Tpm1-216ENSMUST00000113707 Shroom4Q1W617 1475 aa40,52■■■■■ 4,08
Tpm1-216ENSMUST00000113707 Npm1Q61937 292 aaKnown RBP40,51■■■■■ 4,08
Tpm1-216ENSMUST00000113707 Dnajc5bQ9CQ94 199 aa40,5■■■■■ 4,07
Tpm1-216ENSMUST00000113707 PtprkP35822 1457 aa40,5■■■■■ 4,07
Tpm1-216ENSMUST00000113707 Rpgrip1Q9EPQ2 1331 aa40,41■■■■■ 4,06
Tpm1-216ENSMUST00000113707 Acin1Q9JIX8 1338 aaKnown RBP40,38■■■■■ 4,05
Tpm1-216ENSMUST00000113707 LrpprcQ6PB66 1392 aaKnown RBP40,33■■■■■ 4,05
Tpm1-216ENSMUST00000113707 Mrc2Q64449 1479 aa40,32■■■■■ 4,04
Tpm1-216ENSMUST00000113707 Arhgap35Q91YM2 1499 aa40,32■■■■■ 4,04
Tpm1-216ENSMUST00000113707 Myt1lP97500 1187 aa40,27■■■■■ 4,04
Tpm1-216ENSMUST00000113707 PogzQ8BZH4 1409 aaKnown RBP40,23■■■■■ 4,03
Tpm1-216ENSMUST00000113707 Efcab5A0JP43 1406 aa40,2■■■■■ 4,03
Tpm1-216ENSMUST00000113707 Map3k1P53349 1493 aa40,19■■■■■ 4,02
Tpm1-216ENSMUST00000113707 Duox2A2AQ99 1517 aa40,11■■■■■ 4,01
Tpm1-216ENSMUST00000113707 Mroh2bQ7M6Y6 1581 aa40,06■■■■■ 4
Tpm1-216ENSMUST00000113707 Dhx29Q6PGC1 1365 aaKnown RBP40,06■■■■■ 4
Tpm1-216ENSMUST00000113707 Kif21aQ9QXL2 1672 aa40,02■■■■■ 4
Tpm1-216ENSMUST00000113707 Zeb1Q64318 1117 aa39,92■■■■□ 3,98
Tpm1-216ENSMUST00000113707 AqrQ8CFQ3 1481 aaKnown RBP39,91■■■■□ 3,98
Tpm1-216ENSMUST00000113707 Clip1Q922J3 1391 aa39,9■■■■□ 3,98
Tpm1-216ENSMUST00000113707 Crocc2F6XLV1 1638 aa39,89■■■■□ 3,98
Tpm1-216ENSMUST00000113707 Samd9lQ69Z37 1561 aa39,81■■■■□ 3,96
Tpm1-216ENSMUST00000113707 Eea1Q8BL66 1411 aa39,74■■■■□ 3,95
Tpm1-216ENSMUST00000113707 SynmQ70IV5 1561 aa39,72■■■■□ 3,95
Tpm1-216ENSMUST00000113707 Carmil1Q6EDY6 1374 aa39,69■■■■□ 3,94
Tpm1-216ENSMUST00000113707 Setd5Q5XJV7 1441 aa39,6■■■■□ 3,93
Tpm1-216ENSMUST00000113707 Arap1Q4LDD4 1452 aa39,56■■■■□ 3,92
Tpm1-216ENSMUST00000113707 Erich3F6QRE9 1637 aa39,55■■■■□ 3,92
Tpm1-216ENSMUST00000113707 Ankrd26Q811D2 1581 aa39,54■■■■□ 3,92
Tpm1-216ENSMUST00000113707 Plb1Q3TTY0 1478 aa39,54■■■■□ 3,92
Tpm1-216ENSMUST00000113707 Rad54l2Q99NG0 1466 aa39,54■■■■□ 3,92
Tpm1-216ENSMUST00000113707 Urb2E9Q7L1 1524 aaKnown RBP39,48■■■■□ 3,91
Tpm1-216ENSMUST00000113707 Arhgef5E9Q7D5 1581 aa39,47■■■■□ 3,91
Tpm1-216ENSMUST00000113707 Polr1aO35134 1717 aaKnown RBP39,41■■■■□ 3,9
Tpm1-216ENSMUST00000113707 Cux1P53564 1515 aa39,39■■■■□ 3,9
Retrieved 100 of 22,080 RNA–protein pairs in 12,6 ms