Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm25239-201ENSMUST00000174915 86 ntBASIC41,96■■■■■ 4,31
Ushbp1Q8R370 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38,98■■■■□ 3,83
Ushbp1Q8R370 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38,39■■■■□ 3,74
Ushbp1Q8R370 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38,24■■■■□ 3,71
Ushbp1Q8R370 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37,17■■■■□ 3,54
Ushbp1Q8R370 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36,97■■■■□ 3,51
Ushbp1Q8R370 Gm24109-201ENSMUST00000175489 103 ntBASIC36,56■■■■□ 3,44
Ushbp1Q8R370 Gm15042-201ENSMUST00000120212 883 ntBASIC36,28■■■■□ 3,4
Ushbp1Q8R370 Psd-208ENSMUST00000224556 2034 ntBASIC35,59■■■■□ 3,29
Ushbp1Q8R370 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35,51■■■■□ 3,28
Ushbp1Q8R370 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35,43■■■■□ 3,26
Ushbp1Q8R370 Gm15045-201ENSMUST00000117359 883 ntBASIC35,39■■■■□ 3,26
Ushbp1Q8R370 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35,37■■■■□ 3,25
Ushbp1Q8R370 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35,37■■■■□ 3,25
Ushbp1Q8R370 Gm23366-201ENSMUST00000175022 89 ntBASIC34,97■■■■□ 3,19
Ushbp1Q8R370 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34,94■■■■□ 3,18
Ushbp1Q8R370 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34,87■■■■□ 3,17
Ushbp1Q8R370 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,79■■■■□ 3,16
Ushbp1Q8R370 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34,76■■■■□ 3,16
Ushbp1Q8R370 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34,3■■■■□ 3,08
Ushbp1Q8R370 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34,25■■■■□ 3,07
Ushbp1Q8R370 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34,21■■■■□ 3,07
Ushbp1Q8R370 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34,12■■■■□ 3,05
Ushbp1Q8R370 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34,11■■■■□ 3,05
Ushbp1Q8R370 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34,09■■■■□ 3,05
Ushbp1Q8R370 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34,01■■■■□ 3,04
Ushbp1Q8R370 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34,01■■■■□ 3,03
Ushbp1Q8R370 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33,98■■■■□ 3,03
Ushbp1Q8R370 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33,93■■■■□ 3,02
Ushbp1Q8R370 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33,91■■■■□ 3,02
Ushbp1Q8R370 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33,89■■■■□ 3,02
Ushbp1Q8R370 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33,84■■■■□ 3,01
Ushbp1Q8R370 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33,83■■■■□ 3,01
Ushbp1Q8R370 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33,81■■■■□ 3
Ushbp1Q8R370 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33,81■■■■□ 3
Ushbp1Q8R370 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33,62■■■□□ 2,97
Ushbp1Q8R370 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33,61■■■□□ 2,97
Ushbp1Q8R370 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33,57■■■□□ 2,96
Ushbp1Q8R370 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33,54■■■□□ 2,96
Ushbp1Q8R370 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,54■■■□□ 2,96
Ushbp1Q8R370 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33,5■■■□□ 2,95
Ushbp1Q8R370 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33,39■■■□□ 2,94
Ushbp1Q8R370 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33,27■■■□□ 2,92
Ushbp1Q8R370 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33,27■■■□□ 2,92
Ushbp1Q8R370 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33,26■■■□□ 2,91
Ushbp1Q8R370 Gm25238-201ENSMUST00000174914 89 ntBASIC33,24■■■□□ 2,91
Ushbp1Q8R370 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33,08■■■□□ 2,89
Ushbp1Q8R370 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33,08■■■□□ 2,89
Ushbp1Q8R370 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33,07■■■□□ 2,88
Ushbp1Q8R370 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,91■■■□□ 2,86
Ushbp1Q8R370 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32,82■■■□□ 2,84
Ushbp1Q8R370 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32,75■■■□□ 2,83
Ushbp1Q8R370 Gm10524-201ENSMUST00000181931 1893 ntBASIC32,65■■■□□ 2,82
Ushbp1Q8R370 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32,65■■■□□ 2,82
Ushbp1Q8R370 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32,56■■■□□ 2,8
Ushbp1Q8R370 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32,54■■■□□ 2,8
Ushbp1Q8R370 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32,52■■■□□ 2,8
Ushbp1Q8R370 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32,45■■■□□ 2,79
Ushbp1Q8R370 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32,45■■■□□ 2,79
Ushbp1Q8R370 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32,43■■■□□ 2,78
Ushbp1Q8R370 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32,28■■■□□ 2,76
Ushbp1Q8R370 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32,22■■■□□ 2,75
Ushbp1Q8R370 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32,16■■■□□ 2,74
Ushbp1Q8R370 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32,16■■■□□ 2,74
Ushbp1Q8R370 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32,09■■■□□ 2,73
Ushbp1Q8R370 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32,05■■■□□ 2,72
Ushbp1Q8R370 Gm25262-201ENSMUST00000174934 133 ntBASIC32,05■■■□□ 2,72
Ushbp1Q8R370 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32,02■■■□□ 2,72
Ushbp1Q8R370 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31,98■■■□□ 2,71
Ushbp1Q8R370 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31,93■■■□□ 2,7
Ushbp1Q8R370 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31,92■■■□□ 2,7
Ushbp1Q8R370 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31,86■■■□□ 2,69
Ushbp1Q8R370 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31,82■■■□□ 2,68
Ushbp1Q8R370 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31,8■■■□□ 2,68
Ushbp1Q8R370 Gm42596-201ENSMUST00000196305 1958 ntBASIC31,79■■■□□ 2,68
Ushbp1Q8R370 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31,77■■■□□ 2,68
Ushbp1Q8R370 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31,77■■■□□ 2,68
Ushbp1Q8R370 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31,73■■■□□ 2,67
Ushbp1Q8R370 Gm27325-201ENSMUST00000175467 74 ntBASIC31,71■■■□□ 2,67
Ushbp1Q8R370 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31,61■■■□□ 2,65
Ushbp1Q8R370 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31,6■■■□□ 2,65
Ushbp1Q8R370 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31,56■■■□□ 2,64
Ushbp1Q8R370 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31,55■■■□□ 2,64
Ushbp1Q8R370 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31,52■■■□□ 2,64
Ushbp1Q8R370 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31,5■■■□□ 2,63
Ushbp1Q8R370 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31,42■■■□□ 2,62
Ushbp1Q8R370 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31,4■■■□□ 2,62
Ushbp1Q8R370 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31,4■■■□□ 2,62
Ushbp1Q8R370 Gm26115-201ENSMUST00000175605 87 ntBASIC31,4■■■□□ 2,62
Ushbp1Q8R370 Rab21-202ENSMUST00000218831 843 ntBASIC31,39■■■□□ 2,62
Ushbp1Q8R370 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31,38■■■□□ 2,61
Ushbp1Q8R370 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31,36■■■□□ 2,61
Ushbp1Q8R370 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31,34■■■□□ 2,61
Ushbp1Q8R370 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31,33■■■□□ 2,61
Ushbp1Q8R370 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31,31■■■□□ 2,6
Ushbp1Q8R370 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31,31■■■□□ 2,6
Ushbp1Q8R370 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31,28■■■□□ 2,6
Ushbp1Q8R370 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31,24■■■□□ 2,59
Ushbp1Q8R370 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31,22■■■□□ 2,59
Ushbp1Q8R370 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Retrieved 100 of 76,532 protein–RNA pairs in 46,9 ms