Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm25239-201ENSMUST00000174915 86 ntBASIC41.96■■■■■ 4.31
Ushbp1Q8R370 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
Ushbp1Q8R370 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.39■■■■□ 3.74
Ushbp1Q8R370 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
Ushbp1Q8R370 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
Ushbp1Q8R370 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.97■■■■□ 3.51
Ushbp1Q8R370 Gm24109-201ENSMUST00000175489 103 ntBASIC36.56■■■■□ 3.44
Ushbp1Q8R370 Gm15042-201ENSMUST00000120212 883 ntBASIC36.28■■■■□ 3.4
Ushbp1Q8R370 Psd-208ENSMUST00000224556 2034 ntBASIC35.59■■■■□ 3.29
Ushbp1Q8R370 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
Ushbp1Q8R370 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
Ushbp1Q8R370 Gm15045-201ENSMUST00000117359 883 ntBASIC35.39■■■■□ 3.26
Ushbp1Q8R370 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
Ushbp1Q8R370 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Ushbp1Q8R370 Gm23366-201ENSMUST00000175022 89 ntBASIC34.97■■■■□ 3.19
Ushbp1Q8R370 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.94■■■■□ 3.18
Ushbp1Q8R370 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Ushbp1Q8R370 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Ushbp1Q8R370 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.76■■■■□ 3.16
Ushbp1Q8R370 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
Ushbp1Q8R370 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.25■■■■□ 3.07
Ushbp1Q8R370 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
Ushbp1Q8R370 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
Ushbp1Q8R370 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
Ushbp1Q8R370 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
Ushbp1Q8R370 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.01■■■■□ 3.04
Ushbp1Q8R370 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
Ushbp1Q8R370 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.98■■■■□ 3.03
Ushbp1Q8R370 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.93■■■■□ 3.02
Ushbp1Q8R370 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.91■■■■□ 3.02
Ushbp1Q8R370 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
Ushbp1Q8R370 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.84■■■■□ 3.01
Ushbp1Q8R370 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.83■■■■□ 3.01
Ushbp1Q8R370 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Ushbp1Q8R370 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Ushbp1Q8R370 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Ushbp1Q8R370 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Ushbp1Q8R370 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.57■■■□□ 2.96
Ushbp1Q8R370 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
Ushbp1Q8R370 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.54■■■□□ 2.96
Ushbp1Q8R370 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.5■■■□□ 2.95
Ushbp1Q8R370 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Ushbp1Q8R370 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.27■■■□□ 2.92
Ushbp1Q8R370 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Ushbp1Q8R370 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
Ushbp1Q8R370 Gm25238-201ENSMUST00000174914 89 ntBASIC33.24■■■□□ 2.91
Ushbp1Q8R370 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
Ushbp1Q8R370 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Ushbp1Q8R370 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.07■■■□□ 2.88
Ushbp1Q8R370 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.91■■■□□ 2.86
Ushbp1Q8R370 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Ushbp1Q8R370 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.75■■■□□ 2.83
Ushbp1Q8R370 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.65■■■□□ 2.82
Ushbp1Q8R370 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Ushbp1Q8R370 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Ushbp1Q8R370 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Ushbp1Q8R370 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
Ushbp1Q8R370 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
Ushbp1Q8R370 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32.45■■■□□ 2.79
Ushbp1Q8R370 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
Ushbp1Q8R370 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Ushbp1Q8R370 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
Ushbp1Q8R370 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Ushbp1Q8R370 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.16■■■□□ 2.74
Ushbp1Q8R370 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.09■■■□□ 2.73
Ushbp1Q8R370 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Ushbp1Q8R370 Gm25262-201ENSMUST00000174934 133 ntBASIC32.05■■■□□ 2.72
Ushbp1Q8R370 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Ushbp1Q8R370 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Ushbp1Q8R370 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.93■■■□□ 2.7
Ushbp1Q8R370 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ushbp1Q8R370 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Ushbp1Q8R370 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.82■■■□□ 2.68
Ushbp1Q8R370 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.8■■■□□ 2.68
Ushbp1Q8R370 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.79■■■□□ 2.68
Ushbp1Q8R370 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ushbp1Q8R370 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
Ushbp1Q8R370 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.73■■■□□ 2.67
Ushbp1Q8R370 Gm27325-201ENSMUST00000175467 74 ntBASIC31.71■■■□□ 2.67
Ushbp1Q8R370 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.61■■■□□ 2.65
Ushbp1Q8R370 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ushbp1Q8R370 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ushbp1Q8R370 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Ushbp1Q8R370 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.52■■■□□ 2.64
Ushbp1Q8R370 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.5■■■□□ 2.63
Ushbp1Q8R370 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
Ushbp1Q8R370 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ushbp1Q8R370 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ushbp1Q8R370 Gm26115-201ENSMUST00000175605 87 ntBASIC31.4■■■□□ 2.62
Ushbp1Q8R370 Rab21-202ENSMUST00000218831 843 ntBASIC31.39■■■□□ 2.62
Ushbp1Q8R370 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
Ushbp1Q8R370 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.36■■■□□ 2.61
Ushbp1Q8R370 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ushbp1Q8R370 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
Ushbp1Q8R370 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Ushbp1Q8R370 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.31■■■□□ 2.6
Ushbp1Q8R370 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ushbp1Q8R370 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ushbp1Q8R370 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Ushbp1Q8R370 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 8.3 ms