Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Trim47Q8C0E3 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Trim47Q8C0E3 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
Trim47Q8C0E3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.43■■■□□ 2.3
Trim47Q8C0E3 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Trim47Q8C0E3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
Trim47Q8C0E3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
Trim47Q8C0E3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Trim47Q8C0E3 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Trim47Q8C0E3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Trim47Q8C0E3 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Trim47Q8C0E3 Peli2-204ENSMUST00000226513 1320 ntBASIC29.35■■■□□ 2.29
Trim47Q8C0E3 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Trim47Q8C0E3 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
Trim47Q8C0E3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
Trim47Q8C0E3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.29■■■□□ 2.28
Trim47Q8C0E3 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Trim47Q8C0E3 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
Trim47Q8C0E3 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.28■■■□□ 2.28
Trim47Q8C0E3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Trim47Q8C0E3 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
Trim47Q8C0E3 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Trim47Q8C0E3 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Trim47Q8C0E3 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC29.2■■■□□ 2.26
Trim47Q8C0E3 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
Trim47Q8C0E3 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
Trim47Q8C0E3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC29.18■■■□□ 2.26
Trim47Q8C0E3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC29.18■■■□□ 2.26
Trim47Q8C0E3 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC29.17■■■□□ 2.26
Trim47Q8C0E3 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Trim47Q8C0E3 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Trim47Q8C0E3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Trim47Q8C0E3 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Trim47Q8C0E3 Gm16148-201ENSMUST00000119653 893 ntBASIC29.07■■■□□ 2.24
Trim47Q8C0E3 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Trim47Q8C0E3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Trim47Q8C0E3 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC29.05■■■□□ 2.24
Trim47Q8C0E3 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Trim47Q8C0E3 Gm2415-204ENSMUST00000190235 2004 ntBASIC29.03■■■□□ 2.24
Trim47Q8C0E3 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Trim47Q8C0E3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Trim47Q8C0E3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Trim47Q8C0E3 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Trim47Q8C0E3 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Trim47Q8C0E3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
Trim47Q8C0E3 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.99■■■□□ 2.23
Trim47Q8C0E3 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Trim47Q8C0E3 Zfp131-205ENSMUST00000223812 663 ntBASIC28.96■■■□□ 2.23
Trim47Q8C0E3 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.23
Trim47Q8C0E3 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Trim47Q8C0E3 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Trim47Q8C0E3 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Trim47Q8C0E3 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC28.91■■■□□ 2.22
Trim47Q8C0E3 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Trim47Q8C0E3 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.21
Trim47Q8C0E3 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.87■■■□□ 2.21
Trim47Q8C0E3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Trim47Q8C0E3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.81■■■□□ 2.2
Trim47Q8C0E3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC28.8■■■□□ 2.2
Trim47Q8C0E3 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Trim47Q8C0E3 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Trim47Q8C0E3 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.2
Trim47Q8C0E3 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Trim47Q8C0E3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.79■■■□□ 2.2
Trim47Q8C0E3 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Trim47Q8C0E3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Trim47Q8C0E3 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.77■■■□□ 2.2
Trim47Q8C0E3 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Trim47Q8C0E3 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Trim47Q8C0E3 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Trim47Q8C0E3 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC28.73■■■□□ 2.19
Trim47Q8C0E3 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Trim47Q8C0E3 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
Trim47Q8C0E3 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Trim47Q8C0E3 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC28.71■■■□□ 2.19
Trim47Q8C0E3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC28.69■■■□□ 2.18
Trim47Q8C0E3 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
Trim47Q8C0E3 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
Trim47Q8C0E3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
Trim47Q8C0E3 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC28.68■■■□□ 2.18
Trim47Q8C0E3 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.68■■■□□ 2.18
Trim47Q8C0E3 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Trim47Q8C0E3 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Trim47Q8C0E3 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC28.65■■■□□ 2.18
Trim47Q8C0E3 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Trim47Q8C0E3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.17
Trim47Q8C0E3 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
Trim47Q8C0E3 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC28.63■■■□□ 2.17
Trim47Q8C0E3 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trim47Q8C0E3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Trim47Q8C0E3 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Trim47Q8C0E3 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
Trim47Q8C0E3 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Trim47Q8C0E3 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
Trim47Q8C0E3 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC28.57■■■□□ 2.16
Trim47Q8C0E3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Trim47Q8C0E3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Trim47Q8C0E3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Trim47Q8C0E3 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
Trim47Q8C0E3 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms