Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm25239-201ENSMUST00000174915 86 ntBASIC42,31■■■■■ 4,36
Trim47Q8C0E3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39,02■■■■□ 3,84
Trim47Q8C0E3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38,48■■■■□ 3,75
Trim47Q8C0E3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37,68■■■■□ 3,62
Trim47Q8C0E3 Gm15042-201ENSMUST00000120212 883 ntBASIC37,15■■■■□ 3,54
Trim47Q8C0E3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36,86■■■■□ 3,49
Trim47Q8C0E3 Gm24109-201ENSMUST00000175489 103 ntBASIC36,59■■■■□ 3,45
Trim47Q8C0E3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36,42■■■■□ 3,42
Trim47Q8C0E3 Gm15045-201ENSMUST00000117359 883 ntBASIC36,41■■■■□ 3,42
Trim47Q8C0E3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35,94■■■■□ 3,34
Trim47Q8C0E3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35,69■■■■□ 3,3
Trim47Q8C0E3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35,38■■■■□ 3,25
Trim47Q8C0E3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35,32■■■■□ 3,24
Trim47Q8C0E3 Gm23366-201ENSMUST00000175022 89 ntBASIC35,31■■■■□ 3,24
Trim47Q8C0E3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35,13■■■■□ 3,21
Trim47Q8C0E3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34,99■■■■□ 3,19
Trim47Q8C0E3 Psd-208ENSMUST00000224556 2034 ntBASIC34,83■■■■□ 3,17
Trim47Q8C0E3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34,69■■■■□ 3,14
Trim47Q8C0E3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34,65■■■■□ 3,14
Trim47Q8C0E3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34,59■■■■□ 3,13
Trim47Q8C0E3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34,59■■■■□ 3,13
Trim47Q8C0E3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,57■■■■□ 3,13
Trim47Q8C0E3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34,42■■■■□ 3,1
Trim47Q8C0E3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34,32■■■■□ 3,08
Trim47Q8C0E3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34,28■■■■□ 3,08
Trim47Q8C0E3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34,22■■■■□ 3,07
Trim47Q8C0E3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34,16■■■■□ 3,06
Trim47Q8C0E3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34,15■■■■□ 3,06
Trim47Q8C0E3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34,11■■■■□ 3,05
Trim47Q8C0E3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33,88■■■■□ 3,01
Trim47Q8C0E3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33,71■■■□□ 2,99
Trim47Q8C0E3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33,7■■■□□ 2,99
Trim47Q8C0E3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33,62■■■□□ 2,97
Trim47Q8C0E3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33,57■■■□□ 2,96
Trim47Q8C0E3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33,48■■■□□ 2,95
Trim47Q8C0E3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33,47■■■□□ 2,95
Trim47Q8C0E3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,47■■■□□ 2,95
Trim47Q8C0E3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33,45■■■□□ 2,95
Trim47Q8C0E3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33,4■■■□□ 2,94
Trim47Q8C0E3 Gm25238-201ENSMUST00000174914 89 ntBASIC33,37■■■□□ 2,93
Trim47Q8C0E3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33,22■■■□□ 2,91
Trim47Q8C0E3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33,03■■■□□ 2,88
Trim47Q8C0E3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,95■■■□□ 2,86
Trim47Q8C0E3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32,95■■■□□ 2,86
Trim47Q8C0E3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32,91■■■□□ 2,86
Trim47Q8C0E3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32,89■■■□□ 2,85
Trim47Q8C0E3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32,85■■■□□ 2,85
Trim47Q8C0E3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32,82■■■□□ 2,84
Trim47Q8C0E3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32,8■■■□□ 2,84
Trim47Q8C0E3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32,75■■■□□ 2,83
Trim47Q8C0E3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32,73■■■□□ 2,83
Trim47Q8C0E3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32,64■■■□□ 2,82
Trim47Q8C0E3 Gm27325-201ENSMUST00000175467 74 ntBASIC32,63■■■□□ 2,81
Trim47Q8C0E3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32,61■■■□□ 2,81
Trim47Q8C0E3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32,6■■■□□ 2,81
Trim47Q8C0E3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32,53■■■□□ 2,8
Trim47Q8C0E3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC32,43■■■□□ 2,78
Trim47Q8C0E3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32,36■■■□□ 2,77
Trim47Q8C0E3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32,34■■■□□ 2,77
Trim47Q8C0E3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32,33■■■□□ 2,77
Trim47Q8C0E3 Gm10524-201ENSMUST00000181931 1893 ntBASIC32,29■■■□□ 2,76
Trim47Q8C0E3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32,28■■■□□ 2,76
Trim47Q8C0E3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32,23■■■□□ 2,75
Trim47Q8C0E3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32,23■■■□□ 2,75
Trim47Q8C0E3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32,22■■■□□ 2,75
Trim47Q8C0E3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32,2■■■□□ 2,75
Trim47Q8C0E3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32,17■■■□□ 2,74
Trim47Q8C0E3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32,13■■■□□ 2,73
Trim47Q8C0E3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32,12■■■□□ 2,73
Trim47Q8C0E3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32,12■■■□□ 2,73
Trim47Q8C0E3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32,06■■■□□ 2,72
Trim47Q8C0E3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32,04■■■□□ 2,72
Trim47Q8C0E3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31,97■■■□□ 2,71
Trim47Q8C0E3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31,9■■■□□ 2,7
Trim47Q8C0E3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31,87■■■□□ 2,69
Trim47Q8C0E3 Gm42596-201ENSMUST00000196305 1958 ntBASIC31,86■■■□□ 2,69
Trim47Q8C0E3 Rab21-202ENSMUST00000218831 843 ntBASIC31,85■■■□□ 2,69
Trim47Q8C0E3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31,84■■■□□ 2,69
Trim47Q8C0E3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31,8■■■□□ 2,68
Trim47Q8C0E3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC31,78■■■□□ 2,68
Trim47Q8C0E3 Gm25262-201ENSMUST00000174934 133 ntBASIC31,77■■■□□ 2,68
Trim47Q8C0E3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31,75■■■□□ 2,67
Trim47Q8C0E3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31,73■■■□□ 2,67
Trim47Q8C0E3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31,72■■■□□ 2,67
Trim47Q8C0E3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31,62■■■□□ 2,65
Trim47Q8C0E3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31,56■■■□□ 2,64
Trim47Q8C0E3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31,51■■■□□ 2,63
Trim47Q8C0E3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31,5■■■□□ 2,63
Trim47Q8C0E3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC31,49■■■□□ 2,63
Trim47Q8C0E3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31,46■■■□□ 2,63
Trim47Q8C0E3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC31,45■■■□□ 2,62
Trim47Q8C0E3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31,44■■■□□ 2,62
Trim47Q8C0E3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31,43■■■□□ 2,62
Trim47Q8C0E3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31,4■■■□□ 2,62
Trim47Q8C0E3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31,3■■■□□ 2,6
Trim47Q8C0E3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31,29■■■□□ 2,6
Trim47Q8C0E3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31,23■■■□□ 2,59
Trim47Q8C0E3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Trim47Q8C0E3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31,19■■■□□ 2,58
Trim47Q8C0E3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31,19■■■□□ 2,58
Retrieved 100 of 76,532 protein–RNA pairs in 11,3 ms