Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm25239-201ENSMUST00000174915 86 ntBASIC42.31■■■■■ 4.36
Trim47Q8C0E3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
Trim47Q8C0E3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
Trim47Q8C0E3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
Trim47Q8C0E3 Gm15042-201ENSMUST00000120212 883 ntBASIC37.15■■■■□ 3.54
Trim47Q8C0E3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
Trim47Q8C0E3 Gm24109-201ENSMUST00000175489 103 ntBASIC36.59■■■■□ 3.45
Trim47Q8C0E3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.42■■■■□ 3.42
Trim47Q8C0E3 Gm15045-201ENSMUST00000117359 883 ntBASIC36.41■■■■□ 3.42
Trim47Q8C0E3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
Trim47Q8C0E3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.69■■■■□ 3.3
Trim47Q8C0E3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
Trim47Q8C0E3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
Trim47Q8C0E3 Gm23366-201ENSMUST00000175022 89 ntBASIC35.31■■■■□ 3.24
Trim47Q8C0E3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
Trim47Q8C0E3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.99■■■■□ 3.19
Trim47Q8C0E3 Psd-208ENSMUST00000224556 2034 ntBASIC34.83■■■■□ 3.17
Trim47Q8C0E3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Trim47Q8C0E3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.65■■■■□ 3.14
Trim47Q8C0E3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
Trim47Q8C0E3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
Trim47Q8C0E3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.13
Trim47Q8C0E3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.42■■■■□ 3.1
Trim47Q8C0E3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.32■■■■□ 3.08
Trim47Q8C0E3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.28■■■■□ 3.08
Trim47Q8C0E3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Trim47Q8C0E3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.16■■■■□ 3.06
Trim47Q8C0E3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.15■■■■□ 3.06
Trim47Q8C0E3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
Trim47Q8C0E3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.88■■■■□ 3.01
Trim47Q8C0E3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Trim47Q8C0E3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
Trim47Q8C0E3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.62■■■□□ 2.97
Trim47Q8C0E3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.57■■■□□ 2.96
Trim47Q8C0E3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Trim47Q8C0E3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Trim47Q8C0E3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.47■■■□□ 2.95
Trim47Q8C0E3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
Trim47Q8C0E3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
Trim47Q8C0E3 Gm25238-201ENSMUST00000174914 89 ntBASIC33.37■■■□□ 2.93
Trim47Q8C0E3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.22■■■□□ 2.91
Trim47Q8C0E3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
Trim47Q8C0E3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.95■■■□□ 2.86
Trim47Q8C0E3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Trim47Q8C0E3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim47Q8C0E3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.85
Trim47Q8C0E3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Trim47Q8C0E3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Trim47Q8C0E3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.8■■■□□ 2.84
Trim47Q8C0E3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Trim47Q8C0E3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Trim47Q8C0E3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.64■■■□□ 2.82
Trim47Q8C0E3 Gm27325-201ENSMUST00000175467 74 ntBASIC32.63■■■□□ 2.81
Trim47Q8C0E3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
Trim47Q8C0E3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Trim47Q8C0E3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
Trim47Q8C0E3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC32.43■■■□□ 2.78
Trim47Q8C0E3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Trim47Q8C0E3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.34■■■□□ 2.77
Trim47Q8C0E3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
Trim47Q8C0E3 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.29■■■□□ 2.76
Trim47Q8C0E3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.28■■■□□ 2.76
Trim47Q8C0E3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.23■■■□□ 2.75
Trim47Q8C0E3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Trim47Q8C0E3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.22■■■□□ 2.75
Trim47Q8C0E3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Trim47Q8C0E3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Trim47Q8C0E3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
Trim47Q8C0E3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
Trim47Q8C0E3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Trim47Q8C0E3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
Trim47Q8C0E3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Trim47Q8C0E3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Trim47Q8C0E3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.9■■■□□ 2.7
Trim47Q8C0E3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Trim47Q8C0E3 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.86■■■□□ 2.69
Trim47Q8C0E3 Rab21-202ENSMUST00000218831 843 ntBASIC31.85■■■□□ 2.69
Trim47Q8C0E3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Trim47Q8C0E3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.8■■■□□ 2.68
Trim47Q8C0E3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Trim47Q8C0E3 Gm25262-201ENSMUST00000174934 133 ntBASIC31.77■■■□□ 2.68
Trim47Q8C0E3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Trim47Q8C0E3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
Trim47Q8C0E3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.72■■■□□ 2.67
Trim47Q8C0E3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
Trim47Q8C0E3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Trim47Q8C0E3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.51■■■□□ 2.63
Trim47Q8C0E3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Trim47Q8C0E3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
Trim47Q8C0E3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Trim47Q8C0E3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
Trim47Q8C0E3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Trim47Q8C0E3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.43■■■□□ 2.62
Trim47Q8C0E3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Trim47Q8C0E3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Trim47Q8C0E3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Trim47Q8C0E3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
Trim47Q8C0E3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Trim47Q8C0E3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Trim47Q8C0E3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms