Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 TAD3YLR316C 969 nt14□□□□□ -0.17
RTR1P40084 YFL067WYFL067W 528 nt13.98□□□□□ -0.17
RTR1P40084 DDR2YOL052C-A 186 nt13.97□□□□□ -0.17
RTR1P40084 STB1YNL309W 1263 nt13.96□□□□□ -0.17
RTR1P40084 YDR094WYDR094W 336 nt13.93□□□□□ -0.18
RTR1P40084 SPC25YER018C 666 nt13.93□□□□□ -0.18
RTR1P40084 YDR524C-BYDR524C-B 201 nt13.92□□□□□ -0.18
RTR1P40084 SNG1YGR197C 1644 nt13.91□□□□□ -0.18
RTR1P40084 MIC10YCL057C-A 294 nt13.91□□□□□ -0.18
RTR1P40084 YDL086C-AYDL086C-A 435 nt13.89□□□□□ -0.19
RTR1P40084 HEM12YDR047W 1089 nt13.88□□□□□ -0.19
RTR1P40084 CCT4YDL143W 1587 nt13.87□□□□□ -0.19
RTR1P40084 ANP1YEL036C 1503 nt13.85□□□□□ -0.19
RTR1P40084 GPI16YHR188C 1833 nt13.85□□□□□ -0.19
RTR1P40084 VPS60YDR486C 690 nt13.84□□□□□ -0.19
RTR1P40084 BDH1YAL060W 1149 nt13.82□□□□□ -0.2
RTR1P40084 FEN2YCR028C 1539 nt13.81□□□□□ -0.2
RTR1P40084 ALG3YBL082C 1377 nt13.8□□□□□ -0.2
RTR1P40084 YFR018CYFR018C 1092 nt13.78□□□□□ -0.2
RTR1P40084 YFL054CYFL054C 1941 nt13.77□□□□□ -0.21
RTR1P40084 PRE6YOL038W 765 nt13.76□□□□□ -0.21
RTR1P40084 SWC5YBR231C 912 nt13.76□□□□□ -0.21
RTR1P40084 YHR056W-AYHR056W-A 435 nt13.75□□□□□ -0.21
RTR1P40084 YSP3YOR003W 1437 nt13.74□□□□□ -0.21
RTR1P40084 YLR415CYLR415C 339 nt13.73□□□□□ -0.21
RTR1P40084 YFL066CYFL066C 1179 nt13.7□□□□□ -0.22
RTR1P40084 YIR016WYIR016W 798 nt13.69□□□□□ -0.22
RTR1P40084 PEX25YPL112C 1185 nt13.68□□□□□ -0.22
RTR1P40084 YNL115CYNL115C 1935 nt13.65□□□□□ -0.22
RTR1P40084 PAU16YKL224C 372 nt13.64□□□□□ -0.23
RTR1P40084 SPT8YLR055C 1809 nt13.62□□□□□ -0.23
RTR1P40084 RAX1YOR301W 1308 nt13.62□□□□□ -0.23
RTR1P40084 RRT5YFR032C 870 nt13.61□□□□□ -0.23
RTR1P40084 YFL015W-AYFL015W-A 318 nt13.59□□□□□ -0.23
RTR1P40084 BNA2YJR078W 1362 nt13.58□□□□□ -0.23
RTR1P40084 MIC12YBR262C 321 nt13.58□□□□□ -0.24
RTR1P40084 SWE1YJL187C 2460 nt13.49□□□□□ -0.25
RTR1P40084 XDJ1YLR090W 1380 nt13.46□□□□□ -0.25
RTR1P40084 SHM2YLR058C 1410 nt13.45□□□□□ -0.26
RTR1P40084 VPS75YNL246W 795 nt13.44□□□□□ -0.26
RTR1P40084 TIM17YJL143W 477 nt13.43□□□□□ -0.26
RTR1P40084 HHO1YPL127C 777 nt13.43□□□□□ -0.26
RTR1P40084 CCA1YER168C 1641 nt13.42□□□□□ -0.26
RTR1P40084 YGR201CYGR201C 678 nt13.38□□□□□ -0.27
RTR1P40084 AGP1YCL025C 1902 nt13.37□□□□□ -0.27
RTR1P40084 GDH3YAL062W 1374 nt13.36□□□□□ -0.27
RTR1P40084 NIT1YIL164C 600 nt13.33□□□□□ -0.28
RTR1P40084 MIR1YJR077C 936 nt13.33□□□□□ -0.28
RTR1P40084 SGT2YOR007C 1041 nt13.29□□□□□ -0.28
RTR1P40084 DUT1YBR252W 444 nt13.28□□□□□ -0.28
RTR1P40084 AVT6YER119C 1347 nt13.28□□□□□ -0.28
RTR1P40084 GLK1YCL040W 1503 nt13.28□□□□□ -0.28
RTR1P40084 NAT4YMR069W 858 nt13.27□□□□□ -0.29
RTR1P40084 PAU7YAR020C 168 nt13.25□□□□□ -0.29
RTR1P40084 THI74YDR438W 1113 nt13.24□□□□□ -0.29
RTR1P40084 PAC11YDR488C 1602 nt13.24□□□□□ -0.29
RTR1P40084 GOR1YNL274C 1053 nt13.21□□□□□ -0.29
RTR1P40084 MSF1YPR047W 1410 nt13.2□□□□□ -0.3
RTR1P40084 SHB17YKR043C 816 nt13.17□□□□□ -0.3
RTR1P40084 DAT1YML113W 747 nt13.16□□□□□ -0.3
RTR1P40084 YDR010CYDR010C 333 nt13.14□□□□□ -0.31
RTR1P40084 UBA4YHR111W 1323 nt13.13□□□□□ -0.31
RTR1P40084 DUS1YML080W 1272 nt13.12□□□□□ -0.31
RTR1P40084 SBA1YKL117W 651 nt13.09□□□□□ -0.31
RTR1P40084 YCR102CYCR102C 1107 nt13.05□□□□□ -0.32
RTR1P40084 FUR4YBR021W 1902 nt13.04□□□□□ -0.32
RTR1P40084 STR3YGL184C 1398 nt13.04□□□□□ -0.32
RTR1P40084 RDN18-1RDN18-1 1800 nt13.02□□□□□ -0.32
RTR1P40084 RDN18-2RDN18-2 1800 nt13.02□□□□□ -0.32
RTR1P40084 YSR3YKR053C 1215 nt13.02□□□□□ -0.33
RTR1P40084 YCL074WYCL074W 927 nt13.01□□□□□ -0.33
RTR1P40084 RET2YFR051C 1641 nt13□□□□□ -0.33
RTR1P40084 YGL034CYGL034C 366 nt13□□□□□ -0.33
RTR1P40084 YJL225CYJL225C 5277 nt12.98□□□□□ -0.33
RTR1P40084 PHO89YBR296C 1725 nt12.98□□□□□ -0.33
RTR1P40084 NBP35YGL091C 987 nt12.97□□□□□ -0.33
RTR1P40084 AQY2YLL052C 450 nt12.97□□□□□ -0.33
RTR1P40084 XYL2YLR070C 1071 nt12.96□□□□□ -0.33
RTR1P40084 SFA1YDL168W 1161 nt12.92□□□□□ -0.34
RTR1P40084 SHH4YLR164W 507 nt12.91□□□□□ -0.34
RTR1P40084 YCR087WYCR087W 516 nt12.86□□□□□ -0.35
RTR1P40084 YHL019W-AYHL019W-A 594 nt12.86□□□□□ -0.35
RTR1P40084 HSP60YLR259C 1719 nt12.85□□□□□ -0.35
RTR1P40084 COQ2YNR041C 1119 nt12.85□□□□□ -0.35
RTR1P40084 TIR3YIL011W 810 nt12.84□□□□□ -0.35
RTR1P40084 RBG1YAL036C 1110 nt12.84□□□□□ -0.35
RTR1P40084 AIM45YPR004C 1035 nt12.83□□□□□ -0.36
RTR1P40084 MRP20YDR405W 792 nt12.8□□□□□ -0.36
RTR1P40084 NDI1YML120C 1542 nt12.78□□□□□ -0.36
RTR1P40084 YKR005CYKR005C 1578 nt12.77□□□□□ -0.36
RTR1P40084 POM34YLR018C 900 nt12.76□□□□□ -0.37
RTR1P40084 TOM6YOR045W 186 nt12.75□□□□□ -0.37
RTR1P40084 PRO1YDR300C 1287 nt12.74□□□□□ -0.37
RTR1P40084 PRP4YPR178W 1398 nt12.73□□□□□ -0.37
RTR1P40084 ARP6YLR085C 1317 nt12.73□□□□□ -0.37
RTR1P40084 RTN2YDL204W 1182 nt12.73□□□□□ -0.37
RTR1P40084 LSC2YGR244C 1284 nt12.72□□□□□ -0.37
RTR1P40084 YGR259CYGR259C 441 nt12.72□□□□□ -0.37
RTR1P40084 BOR1YNL275W 1731 nt12.71□□□□□ -0.37
RTR1P40084 YMR244WYMR244W 1068 nt12.71□□□□□ -0.37
Retrieved 100 of 7,029 protein–RNA pairs in 19.3 ms