Protein–RNA interactions for Protein: O88890

Sh2d1a, SH2 domain-containing protein 1A, mousemouse

Predictions only

Length 126 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh2d1aO88890 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sh2d1aO88890 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.22■□□□□ 0.51
Sh2d1aO88890 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh2d1aO88890 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Sh2d1aO88890 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh2d1aO88890 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh2d1aO88890 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh2d1aO88890 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh2d1aO88890 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh2d1aO88890 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh2d1aO88890 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
Sh2d1aO88890 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.13■□□□□ 0.49
Sh2d1aO88890 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh2d1aO88890 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh2d1aO88890 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sh2d1aO88890 Gm26115-201ENSMUST00000175605 87 ntBASIC18.11■□□□□ 0.49
Sh2d1aO88890 Gm8109-201ENSMUST00000194076 746 ntBASIC18.1■□□□□ 0.49
Sh2d1aO88890 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC18.1■□□□□ 0.49
Sh2d1aO88890 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh2d1aO88890 AC166822.3-201ENSMUST00000227394 661 ntBASIC18.08■□□□□ 0.48
Sh2d1aO88890 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh2d1aO88890 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.07■□□□□ 0.48
Sh2d1aO88890 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh2d1aO88890 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Sh2d1aO88890 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.04■□□□□ 0.48
Sh2d1aO88890 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh2d1aO88890 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Sh2d1aO88890 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh2d1aO88890 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sh2d1aO88890 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh2d1aO88890 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh2d1aO88890 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh2d1aO88890 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh2d1aO88890 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh2d1aO88890 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh2d1aO88890 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh2d1aO88890 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Sh2d1aO88890 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh2d1aO88890 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Sh2d1aO88890 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.46
Sh2d1aO88890 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sh2d1aO88890 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sh2d1aO88890 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Sh2d1aO88890 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh2d1aO88890 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh2d1aO88890 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh2d1aO88890 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh2d1aO88890 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sh2d1aO88890 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Sh2d1aO88890 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh2d1aO88890 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sh2d1aO88890 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC17.9■□□□□ 0.46
Sh2d1aO88890 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sh2d1aO88890 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Sh2d1aO88890 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh2d1aO88890 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sh2d1aO88890 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh2d1aO88890 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh2d1aO88890 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh2d1aO88890 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sh2d1aO88890 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
Sh2d1aO88890 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sh2d1aO88890 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC17.84■□□□□ 0.45
Sh2d1aO88890 Zxda-201ENSMUST00000117281 2621 ntBASIC17.84■□□□□ 0.45
Sh2d1aO88890 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Sh2d1aO88890 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Sh2d1aO88890 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh2d1aO88890 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh2d1aO88890 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh2d1aO88890 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Sh2d1aO88890 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Sh2d1aO88890 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Sh2d1aO88890 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh2d1aO88890 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh2d1aO88890 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh2d1aO88890 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh2d1aO88890 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh2d1aO88890 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sh2d1aO88890 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sh2d1aO88890 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Sh2d1aO88890 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh2d1aO88890 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh2d1aO88890 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh2d1aO88890 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Sh2d1aO88890 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sh2d1aO88890 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC17.75■□□□□ 0.43
Sh2d1aO88890 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sh2d1aO88890 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh2d1aO88890 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sh2d1aO88890 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh2d1aO88890 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC17.71■□□□□ 0.43
Sh2d1aO88890 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Sh2d1aO88890 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh2d1aO88890 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Sh2d1aO88890 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Sh2d1aO88890 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Sh2d1aO88890 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC17.7■□□□□ 0.42
Sh2d1aO88890 Peli2-204ENSMUST00000226513 1320 ntBASIC17.69■□□□□ 0.42
Sh2d1aO88890 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh2d1aO88890 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms