Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC13.52□□□□□ -0.24
FOXA1P55317 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.52□□□□□ -0.24
FOXA1P55317 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA1P55317 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA1P55317 MIR658-201ENST00000385210 100 ntBASIC13.52□□□□□ -0.25
FOXA1P55317 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
FOXA1P55317 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.52□□□□□ -0.25
FOXA1P55317 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA1P55317 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA1P55317 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.52□□□□□ -0.25
FOXA1P55317 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA1P55317 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 AL139424.3-202ENST00000641619 917 ntBASIC13.52□□□□□ -0.25
FOXA1P55317 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA1P55317 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA1P55317 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
FOXA1P55317 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA1P55317 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA1P55317 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
FOXA1P55317 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA1P55317 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA1P55317 PI4KAP2-201ENST00000360806 2080 ntBASIC13.51□□□□□ -0.25
FOXA1P55317 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
FOXA1P55317 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
FOXA1P55317 KRT8P43-201ENST00000406052 1458 ntBASIC13.51□□□□□ -0.25
FOXA1P55317 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA1P55317 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.51□□□□□ -0.25
FOXA1P55317 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA1P55317 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
FOXA1P55317 AC079336.7-201ENST00000623428 1078 ntBASIC13.51□□□□□ -0.25
FOXA1P55317 AC012531.1-201ENST00000562848 2680 ntBASIC13.51□□□□□ -0.25
FOXA1P55317 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
FOXA1P55317 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA1P55317 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA1P55317 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.51□□□□□ -0.25
FOXA1P55317 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA1P55317 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA1P55317 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
FOXA1P55317 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
FOXA1P55317 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 TNRC18P1-201ENST00000502875 3650 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
FOXA1P55317 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
FOXA1P55317 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA1P55317 RN7SL530P-201ENST00000485097 298 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms