Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CD9-212ENST00000610354 1315 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 GLIPR2-201ENST00000377959 812 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 MARCKSL1P2-201ENST00000401037 976 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 GGT8P-201ENST00000418938 532 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC079944.2-201ENST00000478867 734 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AP001505.1-201ENST00000569966 824 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 HSPA7-201ENST00000445535 1927 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 RBM4-202ENST00000396053 1337 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 MIR602-201ENST00000384960 98 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 EEF1GP1-201ENST00000457231 1299 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 NUP210P2-201ENST00000510577 282 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 IGHVII-74-1-201ENST00000517572 241 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 GH2-205ENST00000622506 702 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 GSTM2P1-201ENST00000405166 654 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 SNORA47-201ENST00000458862 138 ntBASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC011389.2-201ENST00000514811 365 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13AQ96RL7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 ZSCAN21-201ENST00000292450 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 SNORD88B-201ENST00000408454 91 ntBASIC13.29□□□□□ -0.28
VPS13AQ96RL7 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 CNN2P1-201ENST00000453616 918 ntBASIC13.29□□□□□ -0.28
VPS13AQ96RL7 RPL26-206ENST00000582556 763 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 FXYD3-212ENST00000605550 590 ntTSL 4 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 AC009118.3-201ENST00000622896 873 ntBASIC13.29□□□□□ -0.28
VPS13AQ96RL7 SNORA50D-202ENST00000627561 132 ntBASIC13.29□□□□□ -0.28
VPS13AQ96RL7 AC019294.4-201ENST00000561777 2905 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms