Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A3P12111 AL162464.2-201ENST00000557761 526 ntTSL 4 BASIC13.85□□□□□ -0.19
COL6A3P12111 HPR-203ENST00000561690 634 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC009034.1-201ENST00000568125 669 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC007728.3-201ENST00000602304 746 ntBASIC13.85□□□□□ -0.19
COL6A3P12111 PGAP2-235ENST00000532523 1696 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 AC104640.1-201ENST00000562617 2109 ntBASIC13.85□□□□□ -0.19
COL6A3P12111 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 LRRC6-201ENST00000250173 1672 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 NHP2-201ENST00000274606 865 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 C1orf158-201ENST00000376210 695 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC007652.1-201ENST00000441150 562 ntTSL 4 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A3P12111 AP001107.8-201ENST00000530805 479 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC073655.2-201ENST00000551941 796 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A3P12111 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 DLG2-AS1_2.1-201ENST00000614607 218 ntBASIC13.85□□□□□ -0.19
COL6A3P12111 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC106872.1-201ENST00000512492 1360 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 AC020658.6-201ENST00000623564 1870 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 GMEB1-201ENST00000294409 1912 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 BCCIP-201ENST00000278100 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 RNA5SP358-201ENST00000362973 117 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 AL096677.1-201ENST00000442884 814 ntTSL 3 BASIC13.84□□□□□ -0.19
COL6A3P12111 AC106748.1-201ENST00000454801 384 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 Metazoa_SRP.186-201ENST00000617234 362 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 LINC00923-208ENST00000621777 503 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 MDP1-201ENST00000288087 730 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 AC092966.1-201ENST00000414895 526 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 AL121892.1-201ENST00000422574 833 ntTSL 3 BASIC13.84□□□□□ -0.19
COL6A3P12111 RN7SL225P-201ENST00000464648 298 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 KRT19P3-201ENST00000507547 828 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 AC010280.2-201ENST00000507733 410 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 AC009086.1-201ENST00000567219 309 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 AC007731.1-203ENST00000583722 474 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 AC011491.3-201ENST00000595644 559 ntTSL 4 BASIC13.84□□□□□ -0.19
COL6A3P12111 ARL14EPL-203ENST00000634632 642 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 AC084337.2-202ENST00000640959 595 ntAPPRIS P5 TSL 4 BASIC13.84□□□□□ -0.19
COL6A3P12111 AC097359.2-201ENST00000604992 2389 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
COL6A3P12111 MAGEB1-201ENST00000378981 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 HSPA7-201ENST00000445535 1927 ntBASIC13.84□□□□□ -0.19
COL6A3P12111 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A3P12111 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A3P12111 JPX-207ENST00000602772 1692 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A3P12111 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A3P12111 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A3P12111 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
COL6A3P12111 MBD3L2-201ENST00000381393 793 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A3P12111 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.83□□□□□ -0.19
COL6A3P12111 AC109635.1-201ENST00000529200 490 ntBASIC13.83□□□□□ -0.19
COL6A3P12111 AL133297.2-201ENST00000563162 485 ntTSL 2 BASIC13.83□□□□□ -0.19
COL6A3P12111 AC079779.3-227ENST00000591927 860 ntTSL 5 BASIC13.83□□□□□ -0.19
COL6A3P12111 AC016526.4-201ENST00000636059 517 ntTSL 3 BASIC13.83□□□□□ -0.19
COL6A3P12111 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A3P12111 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC13.83□□□□□ -0.19
COL6A3P12111 TUBD1-203ENST00000346141 1490 ntTSL 2 BASIC13.83□□□□□ -0.2
COL6A3P12111 AC138035.3-201ENST00000622706 2791 ntBASIC13.83□□□□□ -0.2
COL6A3P12111 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
COL6A3P12111 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
COL6A3P12111 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 OBP2A-203ENST00000371776 689 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 AL031727.2-201ENST00000416470 207 ntTSL 2 BASIC13.83□□□□□ -0.2
COL6A3P12111 AC074351.1-201ENST00000439413 481 ntTSL 2 BASIC13.83□□□□□ -0.2
COL6A3P12111 AC239859.4-201ENST00000582255 675 ntBASIC13.83□□□□□ -0.2
COL6A3P12111 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
COL6A3P12111 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms