Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AKAP1-219ENST00000621116 4285 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AL139220.2-207ENST00000434244 2644 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 GRID1-AS1-203ENST00000630182 2100 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 DUSP16-201ENST00000228862 3402 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 GRIK3-201ENST00000373091 9101 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 GATAD2B-201ENST00000368655 7478 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ADGRE5-202ENST00000357355 3054 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ARL4A-203ENST00000396663 3212 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 DUSP27-202ENST00000361200 4164 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 MIER1-203ENST00000357692 4978 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 MAGEC3-201ENST00000298296 1932 ntAPPRIS P4 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SPATA3-AS1-201ENST00000414876 3508 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 KDM6A-201ENST00000377967 5438 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PLEC-206ENST00000357649 14689 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 TUBB2BP1-201ENST00000404155 871 ntBASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AL390955.1-201ENST00000428694 934 ntBASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 RBSN-204ENST00000449050 903 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AC103988.2-201ENST00000561804 725 ntBASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 Z99916.2-201ENST00000604037 246 ntBASIC8.59□□□□□ -1.03
LINC00643Q86TS7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PFAS-212ENST00000625942 396 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PPIP5K1-201ENST00000334933 5586 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PPIP5K1-203ENST00000360135 5559 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PPIP5K1-204ENST00000360301 5565 ntAPPRIS P3 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PPIP5K1-206ENST00000381885 5596 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ATG5-208ENST00000635758 3035 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 KCNAB2-204ENST00000378083 4142 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 RAI2-202ENST00000360011 2377 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 AC011899.1-201ENST00000436489 3600 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 OSER1-AS1-202ENST00000437730 1563 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PAX6-245ENST00000638914 7300 ntAPPRIS ALT1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 HRC-203ENST00000595625 2044 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 VWDE-201ENST00000275358 5260 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ZNF423-207ENST00000567169 4017 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 LRRC8A-202ENST00000372599 4161 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 EIF2B2-201ENST00000266126 4314 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ZNF133-215ENST00000630056 1999 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 SEPT10-203ENST00000397714 2719 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 COLQ-203ENST00000383788 3005 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.04
LINC00643Q86TS7 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC8.59□□□□□ -1.04
LINC00643Q86TS7 ARPC5-202ENST00000359856 7209 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.04
LINC00643Q86TS7 PTPRG-203ENST00000474889 9021 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.04
LINC00643Q86TS7 CELSR2-201ENST00000271332 10534 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.04
LINC00643Q86TS7 N6AMT1-202ENST00000351429 4781 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AC079779.1-201ENST00000437798 4775 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LY9-205ENST00000392203 2213 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 MADD-206ENST00000402192 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 PCDHB7-201ENST00000231137 3765 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 CU633980.1-201ENST00000613894 1708 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 HNRNPUL1-202ENST00000352456 3426 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 FYN-203ENST00000368667 2416 ntAPPRIS P4 TSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 RDH16-202ENST00000398138 2409 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 CANT1-202ENST00000392446 3252 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ZNF202-201ENST00000336139 4130 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ARL3-201ENST00000260746 3844 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms