Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 BANF1P3-201ENST00000412556 261 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 SLC25A15P3-201ENST00000505530 290 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
PCDH1Q08174 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 FRMPD2B-201ENST00000431305 1347 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 SLC9A3P3-201ENST00000457608 2229 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 AGAP12P-201ENST00000585227 2359 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 KRT8P43-201ENST00000406052 1458 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 AF013593.1-201ENST00000458074 1487 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 MSNP1-201ENST00000511640 1732 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.52□□□□□ -0.24
PCDH1Q08174 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCDH1Q08174 KRT17P5-201ENST00000332088 839 ntBASIC13.52□□□□□ -0.25
PCDH1Q08174 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
PCDH1Q08174 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
PCDH1Q08174 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.52□□□□□ -0.25
PCDH1Q08174 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.52□□□□□ -0.25
PCDH1Q08174 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.52□□□□□ -0.25
PCDH1Q08174 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.52□□□□□ -0.25
PCDH1Q08174 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.52□□□□□ -0.25
PCDH1Q08174 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 PHBP15-201ENST00000574228 665 ntBASIC13.52□□□□□ -0.25
PCDH1Q08174 MIR4538-201ENST00000581377 78 ntBASIC13.52□□□□□ -0.25
PCDH1Q08174 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.52□□□□□ -0.25
PCDH1Q08174 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 AL356740.1-201ENST00000602192 1297 ntBASIC13.52□□□□□ -0.25
PCDH1Q08174 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
PCDH1Q08174 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
PCDH1Q08174 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
PCDH1Q08174 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC13.52□□□□□ -0.25
PCDH1Q08174 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms