Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.53□□□□□ -0.4
H3F3AP84243 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.53□□□□□ -0.4
H3F3AP84243 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
H3F3AP84243 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
H3F3AP84243 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
H3F3AP84243 AC089987.1-201ENST00000551654 2209 ntBASIC12.53□□□□□ -0.4
H3F3AP84243 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
H3F3AP84243 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
H3F3AP84243 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
H3F3AP84243 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC12.53□□□□□ -0.4
H3F3AP84243 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
H3F3AP84243 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 HLA-DQB1-202ENST00000399079 1501 ntBASIC12.52□□□□□ -0.4
H3F3AP84243 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.52□□□□□ -0.4
H3F3AP84243 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 TBC1D27-202ENST00000424239 1573 ntBASIC12.52□□□□□ -0.4
H3F3AP84243 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.52□□□□□ -0.4
H3F3AP84243 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.52□□□□□ -0.4
H3F3AP84243 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.52□□□□□ -0.4
H3F3AP84243 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
H3F3AP84243 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.4
H3F3AP84243 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC12.52□□□□□ -0.41
H3F3AP84243 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.52□□□□□ -0.41
H3F3AP84243 RPL8P2-201ENST00000430538 502 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC12.52□□□□□ -0.41
H3F3AP84243 AC234782.1-201ENST00000451950 919 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 RN7SL788P-201ENST00000460504 316 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 NDUFS6P1-201ENST00000485187 316 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 TPI1-206ENST00000488464 791 ntTSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC12.52□□□□□ -0.41
H3F3AP84243 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.52□□□□□ -0.41
H3F3AP84243 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
H3F3AP84243 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.52□□□□□ -0.41
H3F3AP84243 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
H3F3AP84243 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 AL021578.1-201ENST00000613646 709 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
H3F3AP84243 CICP17-201ENST00000418553 2377 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
H3F3AP84243 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.52□□□□□ -0.41
H3F3AP84243 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 PEG13-201ENST00000631594 5667 ntBASIC12.52□□□□□ -0.41
H3F3AP84243 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
H3F3AP84243 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms