Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 POLR2LP1-206ENST00000444785 187 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 SLC25A15P1-201ENST00000456738 342 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AC007679.1-201ENST00000458609 502 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 RN7SL672P-201ENST00000474091 317 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC12.25□□□□□ -0.45
COL8A1P27658 SLC25A15P3-201ENST00000505530 290 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC12.25□□□□□ -0.45
COL8A1P27658 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC12.25□□□□□ -0.45
COL8A1P27658 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 MYL6-215ENST00000549566 685 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC12.25□□□□□ -0.45
COL8A1P27658 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC12.25□□□□□ -0.45
COL8A1P27658 BATF-202ENST00000555504 361 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 RN7SL556P-201ENST00000582856 298 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC12.25□□□□□ -0.45
COL8A1P27658 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 AC105148.1-201ENST00000604961 409 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AC048382.6-201ENST00000621980 1223 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 BX322534.1-201ENST00000635574 241 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 AC215524.1-201ENST00000635696 241 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 KRT8P18-201ENST00000413425 1445 ntBASIC12.25□□□□□ -0.45
COL8A1P27658 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
COL8A1P27658 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 SNX18-202ENST00000343017 3140 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 MIR611-201ENST00000384869 67 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC12.24□□□□□ -0.45
COL8A1P27658 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 FTH1P18-201ENST00000412071 549 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.24□□□□□ -0.45
COL8A1P27658 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC12.24□□□□□ -0.45
COL8A1P27658 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC12.24□□□□□ -0.45
COL8A1P27658 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 LY6E-215ENST00000523847 427 ntTSL 3 BASIC12.24□□□□□ -0.45
COL8A1P27658 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms