Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL049840.2-201ENST00000602722 535 ntBASIC14.74□□□□□ -0.05
BDNFP23560 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
BDNFP23560 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
BDNFP23560 AC093462.1-201ENST00000621167 1683 ntBASIC14.74□□□□□ -0.05
BDNFP23560 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 AC092053.3-201ENST00000641308 4975 ntBASIC14.74□□□□□ -0.05
BDNFP23560 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 FMO6P-201ENST00000236166 1620 ntBASIC14.74□□□□□ -0.05
BDNFP23560 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
BDNFP23560 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.73□□□□□ -0.05
BDNFP23560 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 DDC-204ENST00000426377 1700 ntTSL 3 BASIC14.73□□□□□ -0.05
BDNFP23560 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.73□□□□□ -0.05
BDNFP23560 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC14.73□□□□□ -0.05
BDNFP23560 LYPLA2P1-203ENST00000447689 696 ntBASIC14.73□□□□□ -0.05
BDNFP23560 COQ10BP2-201ENST00000513804 724 ntBASIC14.73□□□□□ -0.05
BDNFP23560 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC14.73□□□□□ -0.05
BDNFP23560 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.73□□□□□ -0.05
BDNFP23560 AP001065.2-201ENST00000617205 644 ntBASIC14.73□□□□□ -0.05
BDNFP23560 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC14.73□□□□□ -0.05
BDNFP23560 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.73□□□□□ -0.05
BDNFP23560 AL139424.3-202ENST00000641619 917 ntBASIC14.73□□□□□ -0.05
BDNFP23560 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.73□□□□□ -0.05
BDNFP23560 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
BDNFP23560 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
BDNFP23560 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.73□□□□□ -0.05
BDNFP23560 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BDNFP23560 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.72□□□□□ -0.05
BDNFP23560 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 PES1P2-201ENST00000449745 1735 ntBASIC14.72□□□□□ -0.05
BDNFP23560 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 AL137784.3-201ENST00000623858 2288 ntBASIC14.72□□□□□ -0.05
BDNFP23560 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.72□□□□□ -0.05
BDNFP23560 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
BDNFP23560 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC14.72□□□□□ -0.05
BDNFP23560 AC005722.1-201ENST00000431878 964 ntBASIC14.72□□□□□ -0.05
BDNFP23560 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC14.72□□□□□ -0.05
BDNFP23560 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC14.72□□□□□ -0.05
BDNFP23560 LDHBP1-201ENST00000455730 1119 ntBASIC14.72□□□□□ -0.05
BDNFP23560 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.72□□□□□ -0.05
BDNFP23560 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC14.72□□□□□ -0.05
BDNFP23560 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.72□□□□□ -0.05
BDNFP23560 IGHV1-12-201ENST00000518307 205 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms