Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AC103592.1-201ENST00000394513 664 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AC067942.1-202ENST00000471756 1057 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AKR1B1P3-201ENST00000525311 588 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 SORD2P-201ENST00000558556 1069 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 TNRC18P2-201ENST00000417666 2714 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AL354704.1-201ENST00000629369 1966 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 FAM96A-202ENST00000380290 826 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 NRADDP-202ENST00000641269 1585 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AL008719.1-201ENST00000430449 473 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 RPL35P1-201ENST00000450819 370 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 TULP3P1-202ENST00000453253 1291 ntBASIC13.34□□□□□ -0.27
VPS13AQ96RL7 MARVELD3-205ENST00000567501 582 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 ZNF551-202ENST00000596085 469 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13AQ96RL7 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13AQ96RL7 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 RCC2P5-201ENST00000492126 1487 ntBASIC13.33□□□□□ -0.28
VPS13AQ96RL7 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 TPI1P3-201ENST00000335020 740 ntBASIC13.33□□□□□ -0.28
VPS13AQ96RL7 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AC104212.2-201ENST00000478813 628 ntBASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AC005154.1-202ENST00000578293 999 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 RN7SL5P-201ENST00000581458 321 ntBASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AC091905.3-201ENST00000624959 234 ntBASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 KIR2DL1-201ENST00000291633 1203 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 PTPA-219ENST00000435305 530 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SMIM17-201ENST00000598409 1076 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 LMX1A-203ENST00000367893 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13AQ96RL7 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 KLK8-203ENST00000347619 555 ntTSL 2 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms