Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC025822.1-201ENST00000455525 633 ntTSL 2 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 RABL2B-203ENST00000395591 1987 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 MANEA-AS1-201ENST00000564541 2268 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AC108024.1-201ENST00000626286 1721 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 NDUFS5-201ENST00000372967 544 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 NDUFS5-202ENST00000372969 548 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 CLDN10-AS1-201ENST00000416909 895 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 HNRNPA1P33-201ENST00000421426 561 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 HNRNPA1P4-201ENST00000509706 756 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AC092284.1-201ENST00000511386 1289 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AGAP10P-201ENST00000454844 2418 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 DNM1P48-201ENST00000419538 439 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AC004910.1-201ENST00000433493 787 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 Z84721.1-201ENST00000438841 372 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AL669831.4-201ENST00000447500 872 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 HAX1-211ENST00000532105 771 ntTSL 3 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AC018868.2-201ENST00000559655 1259 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 MIR4526-201ENST00000583168 87 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AL117379.1-201ENST00000619319 677 ntBASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHANK3Q9BYB0 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 MRPL43-202ENST00000318325 2134 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 AC005089.1-201ENST00000619486 2241 ntBASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms