Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28BQ9BUN5 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 LINC00638-201ENST00000555578 2518 ntBASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 AC102953.2-201ENST00000609755 3026 ntBASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 LINC01428-201ENST00000449581 874 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 DUX4L46-201ENST00000566845 751 ntBASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28BQ9BUN5 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AL354989.2-201ENST00000435838 1540 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AC124319.4-201ENST00000622931 2161 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 KRT8P4-201ENST00000509735 1454 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 MIR193BHG-211ENST00000641433 5365 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 Z98885.3-201ENST00000624882 1757 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AC005229.1-201ENST00000392885 409 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AC112492.5-201ENST00000421897 457 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 FAM197Y7-201ENST00000432892 766 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 GOLGA2P8-201ENST00000505201 779 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 GBP1P1-201ENST00000394662 1740 ntBASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms