Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 AC093462.1-201ENST00000621167 1683 ntBASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 AC073352.2-201ENST00000609385 439 ntBASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 MYO15B-237ENST00000642007 4893 ntBASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 NRADDP-202ENST00000641269 1585 ntBASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 CYP51A1P3-201ENST00000400072 1428 ntBASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 RN7SL258P-201ENST00000478664 300 ntBASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AP003392.6-201ENST00000607709 325 ntBASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14.24□□□□□ -0.13
SHROOM3Q8TF72 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 AC020922.3-201ENST00000595064 547 ntBASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 LINC01783-202ENST00000614408 828 ntBASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 BX284668.2-205ENST00000619677 828 ntBASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SHROOM3Q8TF72 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms