Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AP000346.4-201ENST00000614827 381 ntBASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 METTL26-214ENST00000614890 801 ntTSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 COL6A4P2-202ENST00000504443 2753 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AL008707.1-201ENST00000422498 534 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AC016700.1-201ENST00000429424 312 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AC093433.1-201ENST00000458048 571 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 RN7SL8P-201ENST00000461771 266 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 RN7SL11P-201ENST00000471305 293 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AC125604.1-201ENST00000496255 707 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MESTP3-201ENST00000503460 968 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AC135983.4-201ENST00000564116 1262 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 GNRHR2-203ENST00000581100 1187 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AL133499.1-201ENST00000596207 608 ntBASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms