Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC061965.1-201ENST00000560524 1465 ntBASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC041040.1-201ENST00000425197 460 ntBASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC136475.7-201ENST00000602949 592 ntBASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 AC106785.2-201ENST00000564385 1319 ntBASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC88AQ3V6T2 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC104115.1-201ENST00000484005 623 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 IGHVII-74-1-201ENST00000517572 241 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 RPL4P6-201ENST00000438116 1304 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 PTN-202ENST00000393083 1599 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC093462.1-201ENST00000621167 1683 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AL928654.5-201ENST00000624831 2501 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AC063977.2-201ENST00000601996 421 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AL031768.1-201ENST00000606542 701 ntBASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 GARS-210ENST00000627489 324 ntTSL 4 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC88AQ3V6T2 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms