Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC14.35□□□□□ -0.11
HMGA1P17096 OR51A9P-201ENST00000422578 911 ntBASIC14.35□□□□□ -0.11
HMGA1P17096 AL512599.1-201ENST00000430724 685 ntBASIC14.35□□□□□ -0.11
HMGA1P17096 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC14.35□□□□□ -0.11
HMGA1P17096 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.35□□□□□ -0.11
HMGA1P17096 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 AC026470.1-201ENST00000478038 846 ntBASIC14.35□□□□□ -0.11
HMGA1P17096 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 KRT18P8-201ENST00000581937 1246 ntBASIC14.35□□□□□ -0.11
HMGA1P17096 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 AC026748.1-201ENST00000624349 3251 ntBASIC14.35□□□□□ -0.11
HMGA1P17096 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 FKBP4P8-201ENST00000610931 1369 ntBASIC14.34□□□□□ -0.11
HMGA1P17096 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HMGA1P17096 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGA1P17096 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HMGA1P17096 COX20P1-201ENST00000366529 357 ntBASIC14.34□□□□□ -0.11
HMGA1P17096 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HMGA1P17096 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 AC092810.2-201ENST00000431570 362 ntBASIC14.34□□□□□ -0.11
HMGA1P17096 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGA1P17096 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGA1P17096 AGPAT5P1-201ENST00000455855 1019 ntBASIC14.34□□□□□ -0.11
HMGA1P17096 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
HMGA1P17096 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC14.34□□□□□ -0.11
HMGA1P17096 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGA1P17096 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGA1P17096 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HMGA1P17096 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGA1P17096 RARS-210ENST00000626454 177 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 AC073869.1-201ENST00000415574 2762 ntBASIC14.34□□□□□ -0.11
HMGA1P17096 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGA1P17096 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGA1P17096 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
HMGA1P17096 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
HMGA1P17096 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HMGA1P17096 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.33□□□□□ -0.11
HMGA1P17096 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
HMGA1P17096 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HMGA1P17096 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HMGA1P17096 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGA1P17096 GEMIN8P4-201ENST00000380526 729 ntBASIC14.33□□□□□ -0.12
HMGA1P17096 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
HMGA1P17096 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HMGA1P17096 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGA1P17096 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC14.33□□□□□ -0.12
HMGA1P17096 AC103563.1-201ENST00000429316 123 ntBASIC14.33□□□□□ -0.12
HMGA1P17096 VENTXP4-201ENST00000449029 958 ntBASIC14.33□□□□□ -0.12
HMGA1P17096 AC104212.2-201ENST00000478813 628 ntBASIC14.33□□□□□ -0.12
HMGA1P17096 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms