Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AC000078.1-201ENST00000420617 682 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC13.86□□□□□ -0.19
PDGFBP01127 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC13.86□□□□□ -0.19
PDGFBP01127 AC079325.1-201ENST00000430386 857 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC13.86□□□□□ -0.19
PDGFBP01127 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.86□□□□□ -0.19
PDGFBP01127 KRT18P15-201ENST00000458108 1291 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 SNORA47-201ENST00000458862 138 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 ABCC6P2-201ENST00000526069 590 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC13.86□□□□□ -0.19
PDGFBP01127 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC13.86□□□□□ -0.19
PDGFBP01127 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC13.86□□□□□ -0.19
PDGFBP01127 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC13.86□□□□□ -0.19
PDGFBP01127 AC005332.2-201ENST00000590010 930 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC13.86□□□□□ -0.19
PDGFBP01127 PAUPAR-201ENST00000630360 2965 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC13.86□□□□□ -0.19
PDGFBP01127 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
PDGFBP01127 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
PDGFBP01127 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 AC026271.1-201ENST00000447794 1348 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 KRT8P25-201ENST00000473150 1456 ntBASIC13.86□□□□□ -0.19
PDGFBP01127 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
PDGFBP01127 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDGFBP01127 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 AC015813.5-201ENST00000624641 1514 ntBASIC13.85□□□□□ -0.19
PDGFBP01127 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 AC074019.1-201ENST00000428788 1096 ntBASIC13.85□□□□□ -0.19
PDGFBP01127 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 YBX1P3-201ENST00000468366 909 ntBASIC13.85□□□□□ -0.19
PDGFBP01127 OR2A1-AS1-203ENST00000468575 568 ntBASIC13.85□□□□□ -0.19
PDGFBP01127 RN7SL87P-201ENST00000497657 288 ntBASIC13.85□□□□□ -0.19
PDGFBP01127 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC13.85□□□□□ -0.19
PDGFBP01127 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC13.85□□□□□ -0.19
PDGFBP01127 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 AC008622.3-201ENST00000621170 600 ntBASIC13.85□□□□□ -0.19
PDGFBP01127 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC13.85□□□□□ -0.19
PDGFBP01127 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
PDGFBP01127 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.85□□□□□ -0.19
PDGFBP01127 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.85□□□□□ -0.19
PDGFBP01127 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDGFBP01127 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PDGFBP01127 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDGFBP01127 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PDGFBP01127 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDGFBP01127 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.84□□□□□ -0.19
PDGFBP01127 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.84□□□□□ -0.19
PDGFBP01127 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDGFBP01127 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDGFBP01127 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDGFBP01127 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.84□□□□□ -0.19
PDGFBP01127 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms