Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC16.95■□□□□ 0.3
RPAP1Q9BWH6 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AC004241.5-201ENST00000623870 2448 ntBASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 LINC00265-2P-201ENST00000413372 782 ntBASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 MIR4472-1-201ENST00000584349 80 ntBASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RPAP1Q9BWH6 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 GCSHP3-201ENST00000431120 391 ntBASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 RPL35P9-201ENST00000446059 350 ntBASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AC084752.1-201ENST00000509766 622 ntBASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 RCC2P1-201ENST00000452257 1476 ntBASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 COL6A4P2-202ENST00000504443 2753 ntBASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RPAP1Q9BWH6 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RPAP1Q9BWH6 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms