Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.45□□□□□ -0.42
SOX2P48431 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.45□□□□□ -0.42
SOX2P48431 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 AL512310.5-201ENST00000551999 515 ntBASIC12.45□□□□□ -0.42
SOX2P48431 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
SOX2P48431 TP53TG3HP-202ENST00000569755 579 ntBASIC12.45□□□□□ -0.42
SOX2P48431 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC12.45□□□□□ -0.42
SOX2P48431 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.45□□□□□ -0.42
SOX2P48431 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 AC138951.2-201ENST00000623455 1161 ntBASIC12.45□□□□□ -0.42
SOX2P48431 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 CCT8L1P-201ENST00000465400 1674 ntBASIC12.45□□□□□ -0.42
SOX2P48431 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC12.45□□□□□ -0.42
SOX2P48431 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.44□□□□□ -0.42
SOX2P48431 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 LINC00638-201ENST00000555578 2518 ntBASIC12.44□□□□□ -0.42
SOX2P48431 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 PHB-210ENST00000511832 1509 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 REXO1L6P-201ENST00000603433 1515 ntBASIC12.44□□□□□ -0.42
SOX2P48431 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.44□□□□□ -0.42
SOX2P48431 HMGA1P1-201ENST00000415560 1062 ntBASIC12.44□□□□□ -0.42
SOX2P48431 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 AC112492.5-201ENST00000421897 457 ntBASIC12.44□□□□□ -0.42
SOX2P48431 AC002472.2-201ENST00000442739 958 ntBASIC12.44□□□□□ -0.42
SOX2P48431 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.44□□□□□ -0.42
SOX2P48431 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC12.44□□□□□ -0.42
SOX2P48431 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.44□□□□□ -0.42
SOX2P48431 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 AC078819.1-201ENST00000547454 765 ntBASIC12.44□□□□□ -0.42
SOX2P48431 AC012085.1-201ENST00000548270 765 ntBASIC12.44□□□□□ -0.42
SOX2P48431 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC12.44□□□□□ -0.42
SOX2P48431 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 RCC2P1-201ENST00000452257 1476 ntBASIC12.44□□□□□ -0.42
SOX2P48431 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 DLX4-206ENST00000611342 1662 ntBASIC12.44□□□□□ -0.42
SOX2P48431 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SOX2P48431 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC12.44□□□□□ -0.42
SOX2P48431 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
SOX2P48431 PCDHB19P-202ENST00000625133 2914 ntBASIC12.44□□□□□ -0.42
SOX2P48431 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms