Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 AC008620.2-201ENST00000510294 1569 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 MIR4326-201ENST00000582203 59 ntBASIC16.46■□□□□ 0.23
HLA-DOAP06340 AP005264.6-204ENST00000588436 719 ntBASIC16.46■□□□□ 0.23
HLA-DOAP06340 AC008972.2-201ENST00000606587 494 ntBASIC16.46■□□□□ 0.23
HLA-DOAP06340 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 AC139749.1-202ENST00000617529 3139 ntBASIC16.46■□□□□ 0.23
HLA-DOAP06340 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DOAP06340 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DOAP06340 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DOAP06340 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.22
HLA-DOAP06340 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DOAP06340 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DOAP06340 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 DDC-204ENST00000426377 1700 ntTSL 3 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DOAP06340 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DOAP06340 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DOAP06340 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 HNRNPA1P56-201ENST00000505767 954 ntBASIC16.45■□□□□ 0.22
HLA-DOAP06340 DLK1-205ENST00000556051 469 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 AC005777.1-201ENST00000588332 187 ntBASIC16.45■□□□□ 0.22
HLA-DOAP06340 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DOAP06340 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DOAP06340 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HLA-DOAP06340 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 AC093462.1-201ENST00000621167 1683 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 AQP7P5-201ENST00000428759 1049 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 AQP7P4-201ENST00000447083 1042 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 AQP7P2-201ENST00000453967 1041 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 RN7SL582P-201ENST00000491078 279 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 AC090136.2-201ENST00000517809 420 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 KRT18P37-201ENST00000520711 1282 ntBASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms