Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AL590640.2-201ENST00000457038 527 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 INGX-202ENST00000489074 768 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AP001889.1-201ENST00000525414 633 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 RBM8B-201ENST00000555532 525 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC132192.2-201ENST00000596206 1147 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 ZACNP1-201ENST00000612259 710 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AL591471.1-201ENST00000621855 229 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 PCDHB19P-202ENST00000625133 2914 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 MAP2-201ENST00000199940 2241 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 C1RL-201ENST00000266542 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 TGM7-201ENST00000452443 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 FMO6P-201ENST00000236166 1620 ntBASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 DDX12P-201ENST00000432996 2947 ntBASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AL355864.2-201ENST00000447420 863 ntBASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AC140658.4-201ENST00000561990 352 ntBASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 WASH4P-201ENST00000564273 1246 ntBASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 OS9-203ENST00000389142 2457 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms