Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 OR10K2-201ENST00000314902 939 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 RN7SL111P-201ENST00000468841 285 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC090825.2-201ENST00000557959 739 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AL031058.1-201ENST00000561592 888 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC022382.1-201ENST00000602768 336 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AL139158.3-201ENST00000641212 1562 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 YBX1P3-201ENST00000468366 909 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC010442.2-201ENST00000509301 407 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC104759.1-201ENST00000559109 939 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 KRT18P8-201ENST00000581937 1246 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 PTAFR-201ENST00000305392 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.4□□□□□ -0.27
VPS13AQ96RL7 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.4□□□□□ -0.27
VPS13AQ96RL7 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
VPS13AQ96RL7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
VPS13AQ96RL7 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 MYL1-202ENST00000352451 1065 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 IL6RP1-201ENST00000417848 1273 ntBASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 PARVG-208ENST00000466375 820 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 RN7SL789P-201ENST00000478944 293 ntBASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AC114812.4-201ENST00000506676 757 ntBASIC13.39□□□□□ -0.27
VPS13AQ96RL7 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 TUBB4AP1-201ENST00000450755 1325 ntBASIC13.39□□□□□ -0.27
VPS13AQ96RL7 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 HBD-202ENST00000380299 785 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 MIR8071-1-201ENST00000616769 65 ntBASIC13.39□□□□□ -0.27
VPS13AQ96RL7 MIR8071-2-201ENST00000616772 65 ntBASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 PPP4R1L-201ENST00000244070 1474 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms