Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 RPL3P2-204ENST00000413027 1203 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL512306.1-201ENST00000432698 848 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 MIR6769A-201ENST00000617340 73 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 API5-208ENST00000531273 1868 ntTSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 TEKT4P2-202ENST00000559466 1312 ntBASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 AL512430.1-201ENST00000392575 860 ntBASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 RN7SL788P-201ENST00000460504 316 ntBASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 AC020763.3-201ENST00000625095 2904 ntBASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 AC019109.1-201ENST00000401725 1874 ntBASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SHROOM3Q8TF72 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 MIR557-201ENST00000385239 98 ntBASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 RN7SL81P-201ENST00000493781 261 ntBASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC14.27□□□□□ -0.12
SHROOM3Q8TF72 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC025183.3-201ENST00000623526 1482 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms