Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.6□□□□□ -0.23
PCDH1Q08174 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 AC079336.7-201ENST00000623428 1078 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
PCDH1Q08174 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 AL139385.1-201ENST00000611744 3272 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 TUBBP5-203ENST00000508529 1334 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 AC020917.4-201ENST00000623994 1999 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 F2-205ENST00000530231 1849 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 DDC-214ENST00000622873 1839 ntTSL 3 BASIC13.6□□□□□ -0.23
PCDH1Q08174 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.59□□□□□ -0.23
PCDH1Q08174 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.59□□□□□ -0.23
PCDH1Q08174 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 LINC02486-201ENST00000604157 3000 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
PCDH1Q08174 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
PCDH1Q08174 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
PCDH1Q08174 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 AC006987.1-201ENST00000413610 527 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.59□□□□□ -0.23
PCDH1Q08174 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.59□□□□□ -0.23
PCDH1Q08174 DUX4L50-201ENST00000455245 715 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.59□□□□□ -0.23
PCDH1Q08174 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.59□□□□□ -0.23
PCDH1Q08174 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 AC005740.1-201ENST00000515639 522 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.59□□□□□ -0.23
PCDH1Q08174 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 AL451050.2-201ENST00000606967 682 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 AC138649.2-201ENST00000615886 705 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 AL161773.1-201ENST00000624845 863 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 AL805961.1-203ENST00000641078 1258 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 AL139424.3-202ENST00000641619 917 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 AC093462.1-201ENST00000621167 1683 ntBASIC13.59□□□□□ -0.23
PCDH1Q08174 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
PCDH1Q08174 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
PCDH1Q08174 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.59□□□□□ -0.23
PCDH1Q08174 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
PCDH1Q08174 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.23
PCDH1Q08174 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
PCDH1Q08174 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.58□□□□□ -0.23
PCDH1Q08174 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.58□□□□□ -0.23
PCDH1Q08174 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
PCDH1Q08174 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.23
PCDH1Q08174 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
PCDH1Q08174 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms