Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.33■□□□□ 0.2
GABPAQ06546 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
GABPAQ06546 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC16.32■□□□□ 0.2
GABPAQ06546 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC16.32■□□□□ 0.2
GABPAQ06546 FAM21EP-201ENST00000417804 985 ntBASIC16.32■□□□□ 0.2
GABPAQ06546 PSMD4P1-201ENST00000433951 1109 ntBASIC16.32■□□□□ 0.2
GABPAQ06546 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC16.32■□□□□ 0.2
GABPAQ06546 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 AC024293.1-201ENST00000467930 498 ntBASIC16.32■□□□□ 0.2
GABPAQ06546 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 KRT8P24-201ENST00000560290 1559 ntBASIC16.32■□□□□ 0.2
GABPAQ06546 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.32■□□□□ 0.2
GABPAQ06546 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 AC008972.2-201ENST00000606587 494 ntBASIC16.32■□□□□ 0.2
GABPAQ06546 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC16.32■□□□□ 0.2
GABPAQ06546 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GABPAQ06546 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
GABPAQ06546 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
GABPAQ06546 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 AC097376.2-205ENST00000610159 5334 ntBASIC16.31■□□□□ 0.2
GABPAQ06546 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.31■□□□□ 0.2
GABPAQ06546 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
GABPAQ06546 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 KRT18P46-201ENST00000435568 1279 ntBASIC16.31■□□□□ 0.2
GABPAQ06546 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC16.31■□□□□ 0.2
GABPAQ06546 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.31■□□□□ 0.2
GABPAQ06546 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
GABPAQ06546 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC16.31■□□□□ 0.2
GABPAQ06546 AC090136.2-201ENST00000517809 420 ntBASIC16.31■□□□□ 0.2
GABPAQ06546 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 TREHP1-201ENST00000531328 465 ntBASIC16.31■□□□□ 0.2
GABPAQ06546 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC16.31■□□□□ 0.2
GABPAQ06546 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 MT3-202ENST00000561640 514 ntTSL 3 BASIC16.31■□□□□ 0.2
GABPAQ06546 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.31■□□□□ 0.2
GABPAQ06546 MIR3940-201ENST00000579148 102 ntBASIC16.31■□□□□ 0.2
GABPAQ06546 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
GABPAQ06546 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 MIR6746-201ENST00000620971 63 ntBASIC16.31■□□□□ 0.2
GABPAQ06546 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.31■□□□□ 0.2
GABPAQ06546 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
GABPAQ06546 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
GABPAQ06546 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms