Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 AL031719.1-201ENST00000623365 2587 ntBASIC12.47□□□□□ -0.41
SOX2P48431 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 AP000437.1-201ENST00000624057 2085 ntBASIC12.47□□□□□ -0.41
SOX2P48431 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 C2-206ENST00000442278 2434 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
SOX2P48431 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 AL008718.2-201ENST00000609206 1313 ntBASIC12.46□□□□□ -0.41
SOX2P48431 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 MIR326-201ENST00000362220 95 ntBASIC12.46□□□□□ -0.41
SOX2P48431 MIR770-201ENST00000390219 98 ntBASIC12.46□□□□□ -0.41
SOX2P48431 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 AC236430.1-201ENST00000402231 743 ntBASIC12.46□□□□□ -0.41
SOX2P48431 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 AL136309.1-201ENST00000403917 691 ntBASIC12.46□□□□□ -0.41
SOX2P48431 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 PIN1P1-201ENST00000412108 996 ntBASIC12.46□□□□□ -0.41
SOX2P48431 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 PMS2P2-201ENST00000425039 1128 ntBASIC12.46□□□□□ -0.41
SOX2P48431 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 BCRP2-202ENST00000447763 634 ntBASIC12.46□□□□□ -0.41
SOX2P48431 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.46□□□□□ -0.41
SOX2P48431 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.46□□□□□ -0.41
SOX2P48431 BCRP6-201ENST00000510112 632 ntBASIC12.46□□□□□ -0.41
SOX2P48431 BCRP7-201ENST00000511549 544 ntBASIC12.46□□□□□ -0.41
SOX2P48431 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.46□□□□□ -0.41
SOX2P48431 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC12.46□□□□□ -0.41
SOX2P48431 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 RN7SL204P-201ENST00000582831 262 ntBASIC12.46□□□□□ -0.41
SOX2P48431 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.46□□□□□ -0.41
SOX2P48431 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
SOX2P48431 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
SOX2P48431 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
SOX2P48431 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SOX2P48431 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SOX2P48431 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.42
SOX2P48431 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
SOX2P48431 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
SOX2P48431 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SOX2P48431 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.42
SOX2P48431 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SOX2P48431 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.46□□□□□ -0.42
SOX2P48431 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC12.46□□□□□ -0.42
SOX2P48431 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 SHC1P1-201ENST00000425230 1745 ntBASIC12.45□□□□□ -0.42
SOX2P48431 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 TUBB4AP1-201ENST00000450755 1325 ntBASIC12.45□□□□□ -0.42
SOX2P48431 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
SOX2P48431 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SOX2P48431 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.45□□□□□ -0.42
SOX2P48431 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms