Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.81□□□□□ -0.04
BDNFP23560 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 SBF1P1-201ENST00000444527 5631 ntBASIC14.81□□□□□ -0.04
BDNFP23560 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.81□□□□□ -0.04
BDNFP23560 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.81□□□□□ -0.04
BDNFP23560 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.81□□□□□ -0.04
BDNFP23560 CELP-201ENST00000411440 1249 ntTSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.81□□□□□ -0.04
BDNFP23560 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC14.81□□□□□ -0.04
BDNFP23560 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.81□□□□□ -0.04
BDNFP23560 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.81□□□□□ -0.04
BDNFP23560 RN7SL8P-201ENST00000461771 266 ntBASIC14.81□□□□□ -0.04
BDNFP23560 AC104784.1-201ENST00000473096 294 ntBASIC14.81□□□□□ -0.04
BDNFP23560 KRT8P2-201ENST00000556193 944 ntBASIC14.81□□□□□ -0.04
BDNFP23560 AC132825.4-202ENST00000578792 434 ntBASIC14.81□□□□□ -0.04
BDNFP23560 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.81□□□□□ -0.04
BDNFP23560 AP005264.5-201ENST00000590066 467 ntBASIC14.81□□□□□ -0.04
BDNFP23560 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 MIR7845-201ENST00000618396 99 ntBASIC14.81□□□□□ -0.04
BDNFP23560 SNX1-214ENST00000625244 324 ntTSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.81□□□□□ -0.04
BDNFP23560 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
BDNFP23560 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.81□□□□□ -0.04
BDNFP23560 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.81□□□□□ -0.04
BDNFP23560 ODCP-201ENST00000459650 1639 ntBASIC14.81□□□□□ -0.04
BDNFP23560 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.81□□□□□ -0.04
BDNFP23560 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BDNFP23560 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 AC041040.2-201ENST00000622926 2899 ntBASIC14.8□□□□□ -0.04
BDNFP23560 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.8□□□□□ -0.04
BDNFP23560 DPY19L2P5-201ENST00000456300 331 ntBASIC14.8□□□□□ -0.04
BDNFP23560 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.8□□□□□ -0.04
BDNFP23560 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC14.8□□□□□ -0.04
BDNFP23560 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 U62317.3-201ENST00000608319 855 ntBASIC14.8□□□□□ -0.04
BDNFP23560 AC091769.1-201ENST00000619576 568 ntBASIC14.8□□□□□ -0.04
BDNFP23560 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
BDNFP23560 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.8□□□□□ -0.04
BDNFP23560 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms