Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 TCAF1P1-201ENST00000414990 2232 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 CYP46A4P-201ENST00000414953 267 ntBASIC14.75□□□□□ -0.05
HDAC4P56524 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.75□□□□□ -0.05
HDAC4P56524 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 CHCHD2P2-201ENST00000503744 321 ntBASIC14.75□□□□□ -0.05
HDAC4P56524 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.75□□□□□ -0.05
HDAC4P56524 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
HDAC4P56524 KRT18P8-201ENST00000581937 1246 ntBASIC14.75□□□□□ -0.05
HDAC4P56524 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 AC091544.8-201ENST00000619490 361 ntBASIC14.75□□□□□ -0.05
HDAC4P56524 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HDAC4P56524 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HDAC4P56524 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HDAC4P56524 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.74□□□□□ -0.05
HDAC4P56524 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.74□□□□□ -0.05
HDAC4P56524 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 AL139158.3-201ENST00000641212 1562 ntBASIC14.74□□□□□ -0.05
HDAC4P56524 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.74□□□□□ -0.05
HDAC4P56524 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.74□□□□□ -0.05
HDAC4P56524 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 RN7SL455P-201ENST00000580629 282 ntBASIC14.74□□□□□ -0.05
HDAC4P56524 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms