Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 AGAP10P-201ENST00000454844 2418 ntBASIC14.95□□□□□ -0.02
LIG3P49916 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 AL136309.1-201ENST00000403917 691 ntBASIC14.95□□□□□ -0.02
LIG3P49916 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.95□□□□□ -0.02
LIG3P49916 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.95□□□□□ -0.02
LIG3P49916 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.95□□□□□ -0.02
LIG3P49916 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.95□□□□□ -0.02
LIG3P49916 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.95□□□□□ -0.02
LIG3P49916 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.95□□□□□ -0.02
LIG3P49916 MIR6869-201ENST00000619434 62 ntBASIC14.95□□□□□ -0.02
LIG3P49916 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.95□□□□□ -0.02
LIG3P49916 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 AC009093.2-202ENST00000620513 2079 ntBASIC14.95□□□□□ -0.02
LIG3P49916 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 KHSRPP1-201ENST00000427983 1768 ntBASIC14.95□□□□□ -0.02
LIG3P49916 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIG3P49916 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
LIG3P49916 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LIG3P49916 AC003102.2-201ENST00000589195 1469 ntBASIC14.95□□□□□ -0.02
LIG3P49916 AC020910.6-201ENST00000623084 1459 ntBASIC14.95□□□□□ -0.02
LIG3P49916 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC14.94□□□□□ -0.02
LIG3P49916 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
LIG3P49916 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 SALL4P5-201ENST00000419001 1760 ntBASIC14.94□□□□□ -0.02
LIG3P49916 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.94□□□□□ -0.02
LIG3P49916 AC079178.1-201ENST00000420915 656 ntBASIC14.94□□□□□ -0.02
LIG3P49916 HIST2H2BB-201ENST00000449108 381 ntBASIC14.94□□□□□ -0.02
LIG3P49916 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.94□□□□□ -0.02
LIG3P49916 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.94□□□□□ -0.02
LIG3P49916 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.94□□□□□ -0.02
LIG3P49916 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.94□□□□□ -0.02
LIG3P49916 AC244157.2-201ENST00000616239 1006 ntBASIC14.94□□□□□ -0.02
LIG3P49916 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 PAM-203ENST00000346918 3302 ntTSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.94□□□□□ -0.02
LIG3P49916 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
LIG3P49916 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LIG3P49916 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC14.94□□□□□ -0.02
LIG3P49916 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIG3P49916 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms