Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 SERBP1P5-201ENST00000510079 1181 ntBASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 GNRHR2-203ENST00000581100 1187 ntBASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 AC009955.4-201ENST00000597192 544 ntBASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 AC008494.3-201ENST00000606615 944 ntBASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 SUPT20HL1-201ENST00000436466 2618 ntBASIC13.77□□□□□ -0.2
CCDC28BQ9BUN5 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.2
CCDC28BQ9BUN5 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28BQ9BUN5 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28BQ9BUN5 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
CCDC28BQ9BUN5 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 SHC1P1-201ENST00000425230 1745 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AL645933.1-201ENST00000440087 609 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC106760.1-201ENST00000508690 800 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 RNA5SP421-201ENST00000516864 134 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 TDH-203ENST00000531764 1110 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC104758.3-203ENST00000562938 2123 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 MIR5189-201ENST00000577370 114 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC073413.1-201ENST00000603927 732 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC004233.3-201ENST00000607794 1269 ntBASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28BQ9BUN5 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms