Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 AL450322.2-201ENST00000421629 759 ntTSL 3 BASIC16.37■□□□□ 0.21
BRCA1P38398 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 AC234582.2-201ENST00000455788 568 ntTSL 3 BASIC16.37■□□□□ 0.21
BRCA1P38398 PRDX2P3-201ENST00000515779 586 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 AC244102.2-201ENST00000597568 955 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 AC011479.2-201ENST00000598146 432 ntTSL 3 BASIC16.37■□□□□ 0.21
BRCA1P38398 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
BRCA1P38398 AL512631.1-201ENST00000604086 840 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 AC020763.2-201ENST00000623155 1255 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 AC113367.3-201ENST00000508316 1912 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC16.37■□□□□ 0.21
BRCA1P38398 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC16.37■□□□□ 0.21
BRCA1P38398 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.37■□□□□ 0.21
BRCA1P38398 A1BG-AS1-203ENST00000594950 1718 ntTSL 2 BASIC16.36■□□□□ 0.21
BRCA1P38398 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC16.36■□□□□ 0.21
BRCA1P38398 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
BRCA1P38398 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.36■□□□□ 0.21
BRCA1P38398 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.36■□□□□ 0.21
BRCA1P38398 MGST3-204ENST00000367888 778 ntTSL 3 BASIC16.36■□□□□ 0.21
BRCA1P38398 AC131235.2-201ENST00000445553 1057 ntBASIC16.36■□□□□ 0.21
BRCA1P38398 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC16.36■□□□□ 0.21
BRCA1P38398 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC16.36■□□□□ 0.21
BRCA1P38398 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC16.36■□□□□ 0.21
BRCA1P38398 AC127496.3-201ENST00000576032 494 ntTSL 3 BASIC16.36■□□□□ 0.21
BRCA1P38398 RN7SL750P-201ENST00000582814 238 ntBASIC16.36■□□□□ 0.21
BRCA1P38398 Metazoa_SRP.68-201ENST00000612673 282 ntBASIC16.36■□□□□ 0.21
BRCA1P38398 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC16.36■□□□□ 0.21
BRCA1P38398 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC16.36■□□□□ 0.21
BRCA1P38398 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
BRCA1P38398 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 AC046158.3-201ENST00000624947 2558 ntBASIC16.36■□□□□ 0.21
BRCA1P38398 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BRCA1P38398 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC16.36■□□□□ 0.21
BRCA1P38398 GBAP1-208ENST00000566701 1546 ntBASIC16.36■□□□□ 0.21
BRCA1P38398 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 SNORA50C-201ENST00000408535 133 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 LINC01678-202ENST00000424921 475 ntTSL 3 BASIC16.35■□□□□ 0.21
BRCA1P38398 OR2A15P-201ENST00000463814 900 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 AC067942.2-201ENST00000506227 1268 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 IGHVII-33-1-201ENST00000524010 280 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 AC073254.1-209ENST00000604677 631 ntTSL 5 BASIC16.35■□□□□ 0.21
BRCA1P38398 AL121992.3-201ENST00000606186 346 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 MIR7704-201ENST00000610524 59 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 SNORA50.1-201ENST00000628590 135 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 ECM1-203ENST00000369049 1925 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.35■□□□□ 0.21
BRCA1P38398 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
BRCA1P38398 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BRCA1P38398 STT3A-211ENST00000529196 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.35■□□□□ 0.21
BRCA1P38398 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 ZNF726-204ENST00000531821 1798 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 SPINK4-201ENST00000379721 402 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 AC004884.1-201ENST00000393647 319 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 GAPDHP65-201ENST00000425487 1006 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC16.35■□□□□ 0.21
BRCA1P38398 MIR4763-201ENST00000581461 92 ntBASIC16.35■□□□□ 0.21
BRCA1P38398 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC16.35■□□□□ 0.21
BRCA1P38398 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms