Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SCN4AP35499 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SCN4AP35499 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SCN4AP35499 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC16.02■□□□□ 0.16
SCN4AP35499 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
SCN4AP35499 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 RN7SKP255-201ENST00000363442 313 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 RN7SKP203-201ENST00000363618 332 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 RN7SKP71-201ENST00000364558 318 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 7SK.1-201ENST00000365328 331 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC16.02■□□□□ 0.16
SCN4AP35499 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC16.02■□□□□ 0.16
SCN4AP35499 AC000078.1-201ENST00000420617 682 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC16.02■□□□□ 0.16
SCN4AP35499 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC16.02■□□□□ 0.16
SCN4AP35499 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 AC091736.1-201ENST00000609370 305 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 AC073592.10-201ENST00000624789 597 ntBASIC16.02■□□□□ 0.16
SCN4AP35499 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SCN4AP35499 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.02■□□□□ 0.15
SCN4AP35499 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
SCN4AP35499 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SCN4AP35499 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SCN4AP35499 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SCN4AP35499 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
SCN4AP35499 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SCN4AP35499 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.02■□□□□ 0.15
SCN4AP35499 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SCN4AP35499 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
SCN4AP35499 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.02■□□□□ 0.15
SCN4AP35499 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SCN4AP35499 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC16.01■□□□□ 0.15
SCN4AP35499 ADPGK-202ENST00000456471 808 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 AC010395.2-201ENST00000509899 904 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC16.01■□□□□ 0.15
SCN4AP35499 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 TLE2-205ENST00000586422 389 ntTSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 AC009779.7-201ENST00000609031 469 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SCN4AP35499 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 AL162595.1-201ENST00000429227 868 ntTSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 RPE-208ENST00000436630 1128 ntTSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 AC116347.1-201ENST00000442824 720 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 ST3GAL1P1-201ENST00000513810 1014 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC16.01■□□□□ 0.15
SCN4AP35499 PIGCP1-201ENST00000527583 895 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 RN7SL5P-201ENST00000581458 321 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 SMIM17-201ENST00000598409 1076 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 AL133551.1-201ENST00000610279 1222 ntBASIC16.01■□□□□ 0.15
SCN4AP35499 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SCN4AP35499 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SCN4AP35499 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SCN4AP35499 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SCN4AP35499 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16■□□□□ 0.15
SCN4AP35499 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16■□□□□ 0.15
SCN4AP35499 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SCN4AP35499 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 AL157832.2-205ENST00000597245 1649 ntBASIC16■□□□□ 0.15
SCN4AP35499 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16■□□□□ 0.15
SCN4AP35499 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SCN4AP35499 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16■□□□□ 0.15
SCN4AP35499 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SCN4AP35499 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16■□□□□ 0.15
SCN4AP35499 IGHV1OR15-9-201ENST00000338912 353 ntAPPRIS P1 BASIC16■□□□□ 0.15
SCN4AP35499 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC16■□□□□ 0.15
SCN4AP35499 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms