Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 AC009145.4-201ENST00000625119 1294 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 AC090505.1-201ENST00000430515 1834 ntBASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 RPS23-204ENST00000507980 836 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC3Q9BQI4 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AL591122.2-201ENST00000624125 1853 ntBASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 BAK1P1-201ENST00000317045 636 ntBASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AC098934.1-203ENST00000442868 1262 ntBASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AL157792.1-201ENST00000488281 530 ntBASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms