Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 FAM90A28P-202ENST00000597191 1374 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 AC008894.3-201ENST00000624324 3103 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 KHDC1L-201ENST00000370388 635 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 FTH1P19-201ENST00000402402 528 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 NUP210P2-201ENST00000510577 282 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 PXN-AS1-205ENST00000542314 707 ntTSL 2 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 AL121790.2-201ENST00000553425 379 ntTSL 4 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 PEBP1P1-201ENST00000554856 510 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 AP003096.1-201ENST00000565199 503 ntTSL 3 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 AP001120.3-201ENST00000585729 489 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 MIR7704-201ENST00000610524 59 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC22.31■■□□□ 1.16
IFT140Q96RY7 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 USP35-204ENST00000530267 2419 ntTSL 2 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
IFT140Q96RY7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
IFT140Q96RY7 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 AC139795.1-201ENST00000499314 838 ntTSL 5 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 AC108082.1-201ENST00000510857 331 ntBASIC22.3■■□□□ 1.16
IFT140Q96RY7 CBX3P4-202ENST00000540428 423 ntTSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 MARVELD3-205ENST00000567501 582 ntAPPRIS ALT2 TSL 3 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 IGHD-202ENST00000613640 1155 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 C3orf36-201ENST00000408895 1668 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
IFT140Q96RY7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
IFT140Q96RY7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 WFDC2-202ENST00000339946 420 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 WFDC2-204ENST00000372676 614 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 SRSF9P1-201ENST00000399149 530 ntBASIC22.29■■□□□ 1.16
IFT140Q96RY7 OR2T32P-201ENST00000403423 963 ntBASIC22.29■■□□□ 1.16
IFT140Q96RY7 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 FAM138A-201ENST00000417324 1187 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 FAM138D-201ENST00000504074 1187 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 FAM138E-201ENST00000507796 1187 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
IFT140Q96RY7 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 AC103706.1-201ENST00000561761 679 ntBASIC22.29■■□□□ 1.16
IFT140Q96RY7 IGHV3OR16-11-201ENST00000565524 349 ntBASIC22.29■■□□□ 1.16
IFT140Q96RY7 AP005264.6-203ENST00000586882 1050 ntTSL 5 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 IFI27-214ENST00000620396 599 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
IFT140Q96RY7 AC009118.3-201ENST00000622896 873 ntBASIC22.29■■□□□ 1.16
IFT140Q96RY7 LINC00963-217ENST00000624009 663 ntTSL 5 BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms