Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC012441.1-201ENST00000446669 685 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 APOA2-204ENST00000464492 530 ntTSL 3 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 GCOM2-201ENST00000509133 1104 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 PTK2-225ENST00000520892 571 ntTSL 4 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 FGFR3P5-201ENST00000564496 886 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 MIR4741-201ENST00000579822 90 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 MIR6756-201ENST00000616240 63 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AP001002.3-201ENST00000623482 206 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AC023794.5-201ENST00000564380 2157 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 RNU1-114P-201ENST00000365297 166 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 KLF2P2-201ENST00000416807 1039 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 SUPT4H1P2-201ENST00000501248 353 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC106760.1-201ENST00000508690 800 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC103988.2-201ENST00000561804 725 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 RN7SL736P-201ENST00000613111 269 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 CICP20-201ENST00000443330 2801 ntBASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC11.87□□□□□ -0.51
PDLIM3Q53GG5 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 MIR497HG-202ENST00000572453 3838 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms