Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
SOX3P41225 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 AL157813.1-201ENST00000612996 587 ntBASIC13.39□□□□□ -0.27
SOX3P41225 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC13.39□□□□□ -0.27
SOX3P41225 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 AC008132.1-202ENST00000342005 1389 ntBASIC13.39□□□□□ -0.27
SOX3P41225 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.39□□□□□ -0.27
SOX3P41225 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
SOX3P41225 AC215219.1-201ENST00000400706 1817 ntBASIC13.39□□□□□ -0.27
SOX3P41225 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SOX3P41225 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SOX3P41225 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 XBP1P1-201ENST00000436573 652 ntBASIC13.38□□□□□ -0.27
SOX3P41225 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC13.38□□□□□ -0.27
SOX3P41225 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 AC090857.1-201ENST00000527400 390 ntBASIC13.38□□□□□ -0.27
SOX3P41225 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.38□□□□□ -0.27
SOX3P41225 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.38□□□□□ -0.27
SOX3P41225 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.38□□□□□ -0.27
SOX3P41225 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.38□□□□□ -0.27
SOX3P41225 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SOX3P41225 AC138627.1-207ENST00000641560 1006 ntBASIC13.38□□□□□ -0.27
SOX3P41225 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
SOX3P41225 AC068760.1-201ENST00000493579 1953 ntBASIC13.38□□□□□ -0.27
SOX3P41225 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX3P41225 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX3P41225 RN7SL832P-201ENST00000607781 1756 ntBASIC13.37□□□□□ -0.27
SOX3P41225 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms