Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.06■□□□□ 0.16
SMARCA1P28370 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.06■□□□□ 0.16
SMARCA1P28370 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 NCLP1-201ENST00000445357 1963 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 Z98885.3-201ENST00000624882 1757 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC16.06■□□□□ 0.16
SMARCA1P28370 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 AL391647.1-201ENST00000395664 511 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SMARCA1P28370 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 AC073210.1-201ENST00000414799 232 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.06■□□□□ 0.16
SMARCA1P28370 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SMARCA1P28370 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 AC025186.1-201ENST00000478174 870 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.06■□□□□ 0.16
SMARCA1P28370 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 RN7SL470P-201ENST00000583069 259 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC16.06■□□□□ 0.16
SMARCA1P28370 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.06■□□□□ 0.16
SMARCA1P28370 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SMARCA1P28370 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC16.06■□□□□ 0.16
SMARCA1P28370 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SMARCA1P28370 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
SMARCA1P28370 AC245140.2-201ENST00000624054 1939 ntBASIC16.06■□□□□ 0.16
SMARCA1P28370 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SMARCA1P28370 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SMARCA1P28370 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.05■□□□□ 0.16
SMARCA1P28370 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SMARCA1P28370 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.05■□□□□ 0.16
SMARCA1P28370 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 AC089987.1-201ENST00000551654 2209 ntBASIC16.05■□□□□ 0.16
SMARCA1P28370 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC16.05■□□□□ 0.16
SMARCA1P28370 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.05■□□□□ 0.16
SMARCA1P28370 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SMARCA1P28370 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.05■□□□□ 0.16
SMARCA1P28370 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.05■□□□□ 0.16
SMARCA1P28370 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 AC069218.1-201ENST00000435269 762 ntBASIC16.05■□□□□ 0.16
SMARCA1P28370 AC092638.2-201ENST00000441105 947 ntBASIC16.05■□□□□ 0.16
SMARCA1P28370 DPY19L2P5-201ENST00000456300 331 ntBASIC16.05■□□□□ 0.16
SMARCA1P28370 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC16.05■□□□□ 0.16
SMARCA1P28370 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
SMARCA1P28370 JPT2-214ENST00000569765 782 ntTSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 MIR3147-201ENST00000577811 66 ntBASIC16.05■□□□□ 0.16
SMARCA1P28370 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
SMARCA1P28370 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC16.05■□□□□ 0.16
SMARCA1P28370 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC16.05■□□□□ 0.16
SMARCA1P28370 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SMARCA1P28370 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms