Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL5A1P20908 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC13.13□□□□□ -0.31
COL5A1P20908 MTHFD2P7-201ENST00000483867 983 ntBASIC13.13□□□□□ -0.31
COL5A1P20908 MBP-230ENST00000528160 584 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC13.13□□□□□ -0.31
COL5A1P20908 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC13.13□□□□□ -0.31
COL5A1P20908 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC13.12□□□□□ -0.31
COL5A1P20908 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
COL5A1P20908 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
COL5A1P20908 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 AL359881.3-201ENST00000602640 1721 ntBASIC13.12□□□□□ -0.31
COL5A1P20908 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
COL5A1P20908 DNM1P46-202ENST00000415963 882 ntBASIC13.12□□□□□ -0.31
COL5A1P20908 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 YY1P2-201ENST00000438766 948 ntBASIC13.12□□□□□ -0.31
COL5A1P20908 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC13.12□□□□□ -0.31
COL5A1P20908 AC053503.3-201ENST00000448375 114 ntBASIC13.12□□□□□ -0.31
COL5A1P20908 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC13.12□□□□□ -0.31
COL5A1P20908 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC13.12□□□□□ -0.31
COL5A1P20908 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC13.12□□□□□ -0.31
COL5A1P20908 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC13.12□□□□□ -0.31
COL5A1P20908 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC13.12□□□□□ -0.31
COL5A1P20908 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 AL009178.2-201ENST00000597278 2719 ntBASIC13.12□□□□□ -0.31
COL5A1P20908 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.12□□□□□ -0.31
COL5A1P20908 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC13.12□□□□□ -0.31
COL5A1P20908 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC13.12□□□□□ -0.31
COL5A1P20908 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.12□□□□□ -0.31
COL5A1P20908 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
COL5A1P20908 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL5A1P20908 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 317.5 ms