Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 MIR1202-201ENST00000408529 83 ntBASIC12.11□□□□□ -0.47
SDCBPO00560 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 CNN2P8-201ENST00000421872 913 ntBASIC12.11□□□□□ -0.47
SDCBPO00560 NME2P1-201ENST00000426182 414 ntBASIC12.11□□□□□ -0.47
SDCBPO00560 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC12.11□□□□□ -0.47
SDCBPO00560 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 AHRR-211ENST00000515206 462 ntTSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC12.11□□□□□ -0.47
SDCBPO00560 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC12.11□□□□□ -0.47
SDCBPO00560 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 AC104506.1-201ENST00000609247 429 ntBASIC12.11□□□□□ -0.47
SDCBPO00560 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC12.11□□□□□ -0.47
SDCBPO00560 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 AC004623.1-201ENST00000624592 2127 ntBASIC12.11□□□□□ -0.47
SDCBPO00560 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
SDCBPO00560 KRT8P4-201ENST00000509735 1454 ntBASIC12.1□□□□□ -0.47
SDCBPO00560 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.1□□□□□ -0.47
SDCBPO00560 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 AC112492.5-201ENST00000421897 457 ntBASIC12.1□□□□□ -0.47
SDCBPO00560 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC12.1□□□□□ -0.47
SDCBPO00560 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC12.1□□□□□ -0.47
SDCBPO00560 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC12.1□□□□□ -0.47
SDCBPO00560 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
SDCBPO00560 AC073413.1-201ENST00000603927 732 ntBASIC12.1□□□□□ -0.47
SDCBPO00560 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC12.1□□□□□ -0.47
SDCBPO00560 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 AL645937.6-201ENST00000641122 3727 ntBASIC12.1□□□□□ -0.47
SDCBPO00560 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 USO1-201ENST00000264904 4135 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 AL805961.2-201ENST00000642139 4817 ntBASIC12.1□□□□□ -0.47
SDCBPO00560 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
SDCBPO00560 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
SDCBPO00560 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
SDCBPO00560 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC12.1□□□□□ -0.47
SDCBPO00560 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SDCBPO00560 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms