Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 AL161729.1-201ENST00000604104 1402 ntBASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 AC233992.3-201ENST00000607491 485 ntBASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TM9SF3Q9HD45 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.47■■□□□ 1.19
TM9SF3Q9HD45 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.47■■□□□ 1.19
TM9SF3Q9HD45 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.47■■□□□ 1.19
TM9SF3Q9HD45 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.47■■□□□ 1.19
TM9SF3Q9HD45 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.47■■□□□ 1.19
TM9SF3Q9HD45 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.47■■□□□ 1.19
TM9SF3Q9HD45 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 HLA-L-211ENST00000482052 1765 ntBASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 JTB-203ENST00000368589 1216 ntTSL 2 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 BX842568.3-201ENST00000418104 571 ntBASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 AL162430.1-201ENST00000480705 870 ntBASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.46■■□□□ 1.19
TM9SF3Q9HD45 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.19
TM9SF3Q9HD45 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TM9SF3Q9HD45 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TM9SF3Q9HD45 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TM9SF3Q9HD45 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TM9SF3Q9HD45 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
TM9SF3Q9HD45 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TM9SF3Q9HD45 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TM9SF3Q9HD45 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
TM9SF3Q9HD45 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
TM9SF3Q9HD45 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TM9SF3Q9HD45 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 pRNA.6-201ENST00000610482 90 ntBASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 pRNA.5-201ENST00000612139 90 ntBASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 pRNA.11-201ENST00000618423 90 ntBASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 pRNA.13-201ENST00000619112 90 ntBASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TM9SF3Q9HD45 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms