Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.72■□□□□ 0.75
LIME1Q9H400 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 AC099791.1-201ENST00000416440 715 ntBASIC19.72■□□□□ 0.75
LIME1Q9H400 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.72■□□□□ 0.75
LIME1Q9H400 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.72■□□□□ 0.75
LIME1Q9H400 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.72■□□□□ 0.75
LIME1Q9H400 AC092171.4-201ENST00000609130 632 ntBASIC19.72■□□□□ 0.75
LIME1Q9H400 IKBKGP1-201ENST00000612193 1073 ntBASIC19.72■□□□□ 0.75
LIME1Q9H400 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.72■□□□□ 0.75
LIME1Q9H400 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.71■□□□□ 0.75
LIME1Q9H400 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.71■□□□□ 0.75
LIME1Q9H400 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.71■□□□□ 0.75
LIME1Q9H400 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.71■□□□□ 0.75
LIME1Q9H400 RARRES2P11-201ENST00000635158 484 ntBASIC19.71■□□□□ 0.75
LIME1Q9H400 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.71■□□□□ 0.75
LIME1Q9H400 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIME1Q9H400 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.71■□□□□ 0.75
LIME1Q9H400 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIME1Q9H400 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIME1Q9H400 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIME1Q9H400 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.7■□□□□ 0.74
LIME1Q9H400 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.7■□□□□ 0.74
LIME1Q9H400 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.7■□□□□ 0.74
LIME1Q9H400 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIME1Q9H400 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIME1Q9H400 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIME1Q9H400 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.7■□□□□ 0.74
LIME1Q9H400 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIME1Q9H400 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.7■□□□□ 0.74
LIME1Q9H400 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.69■□□□□ 0.74
LIME1Q9H400 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
LIME1Q9H400 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
LIME1Q9H400 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIME1Q9H400 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
LIME1Q9H400 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.68■□□□□ 0.74
LIME1Q9H400 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.68■□□□□ 0.74
LIME1Q9H400 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.68■□□□□ 0.74
LIME1Q9H400 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.68■□□□□ 0.74
LIME1Q9H400 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.68■□□□□ 0.74
LIME1Q9H400 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.68■□□□□ 0.74
LIME1Q9H400 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIME1Q9H400 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIME1Q9H400 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LIME1Q9H400 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.67■□□□□ 0.74
LIME1Q9H400 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.67■□□□□ 0.74
LIME1Q9H400 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.67■□□□□ 0.74
LIME1Q9H400 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.67■□□□□ 0.74
LIME1Q9H400 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIME1Q9H400 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIME1Q9H400 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIME1Q9H400 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.66■□□□□ 0.74
LIME1Q9H400 AC004812.2-201ENST00000611079 2094 ntBASIC19.66■□□□□ 0.74
LIME1Q9H400 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LIME1Q9H400 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.66■□□□□ 0.74
LIME1Q9H400 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.66■□□□□ 0.74
LIME1Q9H400 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LIME1Q9H400 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIME1Q9H400 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.65■□□□□ 0.74
LIME1Q9H400 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIME1Q9H400 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIME1Q9H400 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.65■□□□□ 0.74
LIME1Q9H400 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms