Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.03■■□□□ 1.44
CDX2Q99626 DUX4L4-201ENST00000566884 1269 ntBASIC24.03■■□□□ 1.44
CDX2Q99626 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDX2Q99626 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDX2Q99626 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDX2Q99626 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.02■■□□□ 1.44
CDX2Q99626 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC24.02■■□□□ 1.44
CDX2Q99626 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC24.02■■□□□ 1.44
CDX2Q99626 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24.02■■□□□ 1.44
CDX2Q99626 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDX2Q99626 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDX2Q99626 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.02■■□□□ 1.43
CDX2Q99626 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDX2Q99626 AC097639.1-201ENST00000565519 1891 ntBASIC24.01■■□□□ 1.43
CDX2Q99626 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDX2Q99626 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDX2Q99626 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
CDX2Q99626 AC069152.1-201ENST00000438030 544 ntBASIC24.01■■□□□ 1.43
CDX2Q99626 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.01■■□□□ 1.43
CDX2Q99626 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.01■■□□□ 1.43
CDX2Q99626 AL138781.1-201ENST00000566567 1274 ntBASIC24.01■■□□□ 1.43
CDX2Q99626 AC010525.1-201ENST00000585559 441 ntBASIC24.01■■□□□ 1.43
CDX2Q99626 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDX2Q99626 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDX2Q99626 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24■■□□□ 1.43
CDX2Q99626 KRT19P1-201ENST00000405746 1186 ntBASIC24■■□□□ 1.43
CDX2Q99626 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24■■□□□ 1.43
CDX2Q99626 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24■■□□□ 1.43
CDX2Q99626 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24■■□□□ 1.43
CDX2Q99626 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24■■□□□ 1.43
CDX2Q99626 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CDX2Q99626 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CDX2Q99626 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
CDX2Q99626 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CDX2Q99626 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.99■■□□□ 1.43
CDX2Q99626 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.99■■□□□ 1.43
CDX2Q99626 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDX2Q99626 KRT18P11-201ENST00000435214 1283 ntBASIC23.99■■□□□ 1.43
CDX2Q99626 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDX2Q99626 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.99■■□□□ 1.43
CDX2Q99626 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.99■■□□□ 1.43
CDX2Q99626 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.99■■□□□ 1.43
CDX2Q99626 AL050303.2-201ENST00000619798 666 ntBASIC23.99■■□□□ 1.43
CDX2Q99626 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CDX2Q99626 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.99■■□□□ 1.43
CDX2Q99626 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CDX2Q99626 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDX2Q99626 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CDX2Q99626 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.98■■□□□ 1.43
CDX2Q99626 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDX2Q99626 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDX2Q99626 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CDX2Q99626 GUSBP6-202ENST00000438529 1198 ntBASIC23.98■■□□□ 1.43
CDX2Q99626 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.98■■□□□ 1.43
CDX2Q99626 AC141586.4-201ENST00000624558 1573 ntBASIC23.98■■□□□ 1.43
CDX2Q99626 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CDX2Q99626 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDX2Q99626 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CDX2Q99626 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CDX2Q99626 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDX2Q99626 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CDX2Q99626 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
CDX2Q99626 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.97■■□□□ 1.43
CDX2Q99626 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDX2Q99626 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.97■■□□□ 1.43
CDX2Q99626 TPRG1LP1-201ENST00000598702 760 ntBASIC23.97■■□□□ 1.43
CDX2Q99626 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
CDX2Q99626 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDX2Q99626 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.96■■□□□ 1.43
CDX2Q99626 AC133637.1-201ENST00000624115 1537 ntBASIC23.96■■□□□ 1.43
CDX2Q99626 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CDX2Q99626 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDX2Q99626 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDX2Q99626 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CDX2Q99626 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.96■■□□□ 1.43
CDX2Q99626 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDX2Q99626 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
CDX2Q99626 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDX2Q99626 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDX2Q99626 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.95■■□□□ 1.42
CDX2Q99626 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDX2Q99626 SLC7A5P2-201ENST00000553010 536 ntBASIC23.95■■□□□ 1.42
CDX2Q99626 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.95■■□□□ 1.42
CDX2Q99626 ITM2C-210ENST00000620962 501 ntBASIC23.95■■□□□ 1.42
CDX2Q99626 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDX2Q99626 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
CDX2Q99626 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CDX2Q99626 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.94■■□□□ 1.42
CDX2Q99626 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDX2Q99626 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.94■■□□□ 1.42
CDX2Q99626 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDX2Q99626 KRT18P29-201ENST00000397031 1267 ntBASIC23.94■■□□□ 1.42
CDX2Q99626 POU5F1P3-201ENST00000428824 1078 ntBASIC23.94■■□□□ 1.42
CDX2Q99626 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.94■■□□□ 1.42
CDX2Q99626 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC23.94■■□□□ 1.42
CDX2Q99626 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.94■■□□□ 1.42
CDX2Q99626 AL022069.1-201ENST00000568025 1636 ntBASIC23.94■■□□□ 1.42
CDX2Q99626 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.94■■□□□ 1.42
CDX2Q99626 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDX2Q99626 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms