Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CDK5RAP1Q96SZ6 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.4■■□□□ 1.34
CDK5RAP1Q96SZ6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
CDK5RAP1Q96SZ6 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CDK5RAP1Q96SZ6 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CDK5RAP1Q96SZ6 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CDK5RAP1Q96SZ6 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
CDK5RAP1Q96SZ6 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 AC006455.2-201ENST00000429931 906 ntBASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 AL355001.2-201ENST00000620617 1191 ntBASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 AC144652.1-201ENST00000609974 1624 ntBASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDK5RAP1Q96SZ6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 MIR3181-201ENST00000578512 73 ntBASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 AC136469.2-201ENST00000623944 1028 ntBASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CDK5RAP1Q96SZ6 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.37■■□□□ 1.33
CDK5RAP1Q96SZ6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDK5RAP1Q96SZ6 DUX4L4-201ENST00000566884 1269 ntBASIC23.37■■□□□ 1.33
CDK5RAP1Q96SZ6 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
CDK5RAP1Q96SZ6 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDK5RAP1Q96SZ6 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDK5RAP1Q96SZ6 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 MIR4767-201ENST00000582827 78 ntBASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 LINC01529-204ENST00000636474 1715 ntBASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
CDK5RAP1Q96SZ6 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 pRNA.6-201ENST00000610482 90 ntBASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 pRNA.5-201ENST00000612139 90 ntBASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 pRNA.11-201ENST00000618423 90 ntBASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 pRNA.13-201ENST00000619112 90 ntBASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.35■■□□□ 1.33
CDK5RAP1Q96SZ6 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 AC142381.2-201ENST00000566120 298 ntBASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDK5RAP1Q96SZ6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 ABCB10P4-201ENST00000566803 2184 ntBASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.33■■□□□ 1.33
CDK5RAP1Q96SZ6 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDK5RAP1Q96SZ6 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.33■■□□□ 1.32
CDK5RAP1Q96SZ6 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 AL499627.2-201ENST00000606283 725 ntBASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 AL031432.3-201ENST00000607698 485 ntBASIC23.32■■□□□ 1.32
CDK5RAP1Q96SZ6 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms