Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC16.81■□□□□ 0.28
LINC00477Q96M19 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.81■□□□□ 0.28
LINC00477Q96M19 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.81■□□□□ 0.28
LINC00477Q96M19 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC16.8■□□□□ 0.28
LINC00477Q96M19 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LINC00477Q96M19 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC16.8■□□□□ 0.28
LINC00477Q96M19 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.8■□□□□ 0.28
LINC00477Q96M19 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00477Q96M19 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC16.79■□□□□ 0.28
LINC00477Q96M19 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC16.79■□□□□ 0.28
LINC00477Q96M19 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LINC00477Q96M19 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00477Q96M19 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 PVT1_1.1-201ENST00000615125 194 ntBASIC16.78■□□□□ 0.28
LINC00477Q96M19 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 GCA-201ENST00000233612 1694 ntTSL 2 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00477Q96M19 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC16.78■□□□□ 0.28
LINC00477Q96M19 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00477Q96M19 C1orf229-201ENST00000623686 2258 ntBASIC16.77■□□□□ 0.28
LINC00477Q96M19 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00477Q96M19 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC16.77■□□□□ 0.28
LINC00477Q96M19 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00477Q96M19 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00477Q96M19 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC16.77■□□□□ 0.28
LINC00477Q96M19 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00477Q96M19 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
LINC00477Q96M19 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC16.77■□□□□ 0.28
LINC00477Q96M19 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC16.77■□□□□ 0.28
LINC00477Q96M19 AC010980.1-201ENST00000587192 1142 ntBASIC16.77■□□□□ 0.28
LINC00477Q96M19 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00477Q96M19 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LINC00477Q96M19 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
LINC00477Q96M19 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
LINC00477Q96M19 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.77■□□□□ 0.27
LINC00477Q96M19 ESRRAP2-201ENST00000418437 1549 ntBASIC16.76■□□□□ 0.27
LINC00477Q96M19 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LINC00477Q96M19 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
LINC00477Q96M19 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.76■□□□□ 0.27
LINC00477Q96M19 BEX3-202ENST00000372634 753 ntTSL 2 BASIC16.76■□□□□ 0.27
LINC00477Q96M19 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 MIR4508-201ENST00000584178 70 ntBASIC16.76■□□□□ 0.27
LINC00477Q96M19 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC16.76■□□□□ 0.27
LINC00477Q96M19 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.76■□□□□ 0.27
LINC00477Q96M19 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LINC00477Q96M19 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00477Q96M19 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00477Q96M19 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.75■□□□□ 0.27
LINC00477Q96M19 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00477Q96M19 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
LINC00477Q96M19 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LINC00477Q96M19 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
LINC00477Q96M19 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00477Q96M19 AC079630.1-202ENST00000618127 1840 ntBASIC16.75■□□□□ 0.27
LINC00477Q96M19 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00477Q96M19 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC16.75■□□□□ 0.27
LINC00477Q96M19 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00477Q96M19 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00477Q96M19 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00477Q96M19 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LINC00477Q96M19 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00477Q96M19 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00477Q96M19 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms