Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 AC092068.2-201ENST00000590491 1708 ntBASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN3Q8NCR9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.93■□□□□ 0.46
CLRN3Q8NCR9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLRN3Q8NCR9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLRN3Q8NCR9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.9■□□□□ 0.46
CLRN3Q8NCR9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLRN3Q8NCR9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.46
CLRN3Q8NCR9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 C11orf96-202ENST00000528572 1834 ntBASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 MIR6089-201ENST00000616698 64 ntBASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN3Q8NCR9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms